STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3867Similar to Yersinia pestis putative lyse type translocator ypo0483 SWALL:Q8ZIL3 (EMBL:AJ414143) (204 aa) fasta scores: E(): 5.5e-66, 78.92% id in 204 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2710 pa2710 SWALL:Q9I0D2 (EMBL:AE004699) (204 aa) fasta scores: E(): 4.4e-59, 74.87% id in 203 aa. (204 aa)    
Predicted Functional Partners:
ECA2050
Putative membrane protein; Similar to Vibrio vulnificus putative threonine efflux protein vv12697 SWALL:AAO11043 (EMBL:AE016806) (211 aa) fasta scores: E(): 2.3e-12, 30.73% id in 205 aa, and to Vibrio cholerae hypothetical protein Vc1421 SWALL:Q9KS40 (EMBL:AE004221) (212 aa) fasta scores: E(): 1.3e-09, 25.51% id in 196 aa.
  
     0.751
ECA3866
Similar to Yersinia pestis putative membrane protein ypo0484 or y3690 SWALL:Q8ZIL2 (EMBL:AJ414143) (266 aa) fasta scores: E(): 1.7e-82, 82.14% id in 252 aa, and to Salmonella typhi putative membrane protein sty4899 SWALL:Q8Z0V9 (EMBL:AL627284) (303 aa) fasta scores: E(): 1.1e-75, 70.49% id in 261 aa.
     
 0.522
ECA3865
Similar to Yersinia pestis putative membrane protein ypo0485 SWALL:Q8ZIL1 (EMBL:AJ414143) (151 aa) fasta scores: E(): 1.8e-48, 85.06% id in 154 aa, and to Salmonella typhi putative membrane protein sty4898 SWALL:Q8Z0W0 (EMBL:AL627284) (157 aa) fasta scores: E(): 2.1e-43, 71.97% id in 157 aa.
       0.521
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.