STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3883Similar to Yersinia pestis putative membrane protein ypo0467 or y3707 SWALL:Q8ZIM8 (EMBL:AJ414142) (203 aa) fasta scores: E(): 7.3e-60, 84.86% id in 185 aa, and to Salmonella typhimurium, and Salmonella typhi putative regulator yaah or stm0009 or sty0009 SWALL:Q8XGB2 (EMBL:AE008693) (188 aa) fasta scores: E(): 2.7e-54, 78.91% id in 185 aa. (191 aa)    
Predicted Functional Partners:
ECA4501
Similar to Escherichia coli O157:H7 putative enzyme z4856 or ecs4331 SWALL:Q8X6M3 (EMBL:AE005571) (453 aa) fasta scores: E(): 3.5e-72, 46.3% id in 447 aa, and to Vibrio vulnificus acyl-coenzyme A synthetase vv10050 SWALL:Q8DG01 (EMBL:AE016797) (455 aa) fasta scores: E(): 9.7e-48, 37.86% id in 441 aa.
  
  
 0.455
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (44%) [HD]