STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3884Similar to Yersinia pestis putative transport protein ypo0465 or y3709 SWALL:Q8ZIN0 (EMBL:AJ414142) (462 aa) fasta scores: E(): 4e-123, 75.82% id in 426 aa, and to Pseudomonas putida major facilitator family transporter pp5330 SWALL:AAN70895 (EMBL:AE016794) (429 aa) fasta scores: E(): 2.5e-108, 67.95% id in 415 aa. (445 aa)    
Predicted Functional Partners:
mog
Molybdopterin biosynthesis protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri molybdopterin biosynthesis Mog protein Mog or MogA or ChlG or b0009 or z0009 or ecs0009 or sf0010 SWALL:MOG_ECOLI (SWALL:P28694) (195 aa) fasta scores: E(): 2e-61, 85.12% id in 195 aa.
       0.508
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.432
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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