STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3884Similar to Yersinia pestis putative transport protein ypo0465 or y3709 SWALL:Q8ZIN0 (EMBL:AJ414142) (462 aa) fasta scores: E(): 4e-123, 75.82% id in 426 aa, and to Pseudomonas putida major facilitator family transporter pp5330 SWALL:AAN70895 (EMBL:AE016794) (429 aa) fasta scores: E(): 2.5e-108, 67.95% id in 415 aa. (445 aa)    
Predicted Functional Partners:
mog
Molybdopterin biosynthesis protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri molybdopterin biosynthesis Mog protein Mog or MogA or ChlG or b0009 or z0009 or ecs0009 or sf0010 SWALL:MOG_ECOLI (SWALL:P28694) (195 aa) fasta scores: E(): 2e-61, 85.12% id in 195 aa.
       0.510
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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