STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3895Hypothetical protein; No significant database matches. (57 aa)    
Predicted Functional Partners:
rob
Right origin-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri right origin-binding protein Rob or b4396 or z5999 or ecs5354 or sf4428 SWALL:ROB_ECOLI (SWALL:P27292) (289 aa) fasta scores: E(): 5e-81, 67.01% id in 288 aa.
       0.773
creA
Putative exported protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri crea protein CreA or b4397 or c5484 or z6000 or ecs5355 or sf4429 SWALL:CREA_ECOLI (SWALL:P08367) (157 aa) fasta scores: E(): 3e-45, 78.8% id in 151 aa, and to Yersinia pestis putative exported protein ypo0457 or CreA or y3722 SWALL:Q8ZIN8 (EMBL:AJ414142) (155 aa) fasta scores: E(): 6.9e-47, 84.93% id in 146 aa.
       0.558
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.