node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ECA3923 | ECA3925 | ECA3923 | ECA3925 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family. | 0.629 |
ECA3923 | gshB | ECA3923 | ECA3924 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family. | 0.809 |
ECA3923 | yqgF | ECA3923 | ECA3926 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.670 |
ECA3925 | ECA3923 | ECA3925 | ECA3923 | Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family. | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.629 |
ECA3925 | gshB | ECA3925 | ECA3924 | Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family. | Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family. | 0.755 |
ECA3925 | yqgF | ECA3925 | ECA3926 | Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.932 |
alaS | yqgF | ECA3367 | ECA3926 | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.637 |
gshB | ECA3923 | ECA3924 | ECA3923 | Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family. | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.809 |
gshB | ECA3925 | ECA3924 | ECA3925 | Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family. | Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family. | 0.755 |
gshB | yqgF | ECA3924 | ECA3926 | Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.705 |
miaA | yqgF | ECA3935 | ECA3926 | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.591 |
ruvA | yqgF | ECA2492 | ECA3926 | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | 0.414 |
yqgF | ECA3923 | ECA3926 | ECA3923 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.670 |
yqgF | ECA3925 | ECA3926 | ECA3925 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Similar to Salmonella typhi hypothetical protein Sty3249 SWALL:Q8Z3V2 (EMBL:AL627277) (187 aa) fasta scores: E(): 8.8e-53, 71.65% id in 187 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein yqge or b2948 or c3534 or sf2939 SWALL:YQGE_ECOLI (SWALL:P52049) (187 aa) fasta scores: E(): 1.6e-52, 69.51% id in 187 aa; Belongs to the UPF0301 (AlgH) family. | 0.932 |
yqgF | alaS | ECA3926 | ECA3367 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.637 |
yqgF | gshB | ECA3926 | ECA3924 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family. | 0.705 |
yqgF | miaA | ECA3926 | ECA3935 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.591 |
yqgF | ruvA | ECA3926 | ECA2492 | Conserved hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family. | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.414 |