STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3952Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
sftR
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 1.2e-43, 42.19% id in 301 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein sdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 1.3e-30, 36.53% id in 312 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.753
sftR-2
LysR-family transcriptional regulator; Similar to Pseudomonas putida SftR SWALL:Q9WWU4 (EMBL:AF126201) (304 aa) fasta scores: E(): 6.9e-58, 50.82% id in 303 aa, and to Pseudomonas sp. SDS degradation transcriptional activation protein SdsB SWALL:SDSB_PSES9 (SWALL:P52686) (306 aa) fasta scores: E(): 2.3e-29, 37.58% id in 314 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.752
ECA3953
Probable transporter; Similar to Pseudomonas putida major facilitator family transporter pp0702 SWALL:AAN66327 (EMBL:AE016776) (385 aa) fasta scores: E(): 3.2e-42, 39.62% id in 371 aa, and to Rhizobium loti probable transporter mll1210 SWALL:Q98L25 (EMBL:AP002996) (393 aa) fasta scores: E(): 2.8e-21, 27.82% id in 381 aa.
 
     0.751
ECA4427
LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.744
ECA3634
Similar to Brucella melitensis transcriptional regulatory protein, LysR family bmeii1135 SWALL:Q8YAW6 (EMBL:AE009745) (297 aa) fasta scores: E(): 5.1e-26, 30.66% id in 287 aa, and to Rhizobium meliloti putative transcription regulator protein r02876 or smc02984 SWALL:Q92LY6 (EMBL:AL591792) (297 aa) fasta scores: E(): 2.4e-28, 33.33% id in 288 aa.
  
     0.740
ECA2848
Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 1.6e-51, 45.81% id in 299 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 2.2e-53, 46.33% id in 300 aa.
  
     0.726
ECA0916
LysR-family transcriptional regulator; Similar to Listeria innocua transcription activator of glutamate synthase operon GltC SWALL:Q92AS3 (EMBL:AL596170) (295 aa) fasta scores: E(): 8.3e-15, 25.25% id in 293 aa, and to Acinetobacter calcoaceticus ben and cat operon transcriptional regulator BenM SWALL:BENM_ACICA (SWALL:O68014) (304 aa) fasta scores: E(): 1.3e-11, 25% id in 272 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.725
hexA1
LysR-family transcriptional regulator of motility and virulence; Previously sequenced in Pectobacterium carotovorum subsp. atrosepticum as HexA SWALL:O85276 (EMBL:AF057064) (316 aa) fasta scores: E(): 4.1e-120, 99.68% id in 316 aa, and similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 6.8e-95, 79.36% id in 315 aa. Also identical to ECA3032; Belongs to the LysR transcriptional regulatory family.
  
     0.720
hexA2
LysR-family transcriptional regulator of motility and virulence; Previously sequenced in Pectobacterium carotovorum subsp. atrosepticum as HexA SWALL:O85276 (EMBL:AF057064) (316 aa) fasta scores: E(): 4.1e-120, 99.68% id in 316 aa, and similar to Erwinia chrysanthemi pectinase gene transcriptional regulator PecT SWALL:PECT_ERWCH (SWALL:P52662) (316 aa) fasta scores: E(): 6.8e-95, 79.36% id in 315 aa. Also identical to ECA3030.
  
     0.720
ECA2642
Similar to Pseudomonas putida transcriptional regulator, LysR family pp4522 SWALL:AAN70096 (EMBL:AE016791) (297 aa) fasta scores: E(): 5.6e-24, 29.64% id in 280 aa, and to Rhizobium loti transcriptional regulator mlr6990 SWALL:Q987M7 (EMBL:AP003010) (299 aa) fasta scores: E(): 4.7e-18, 30.45% id in 266 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.717
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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