STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3953Probable transporter; Similar to Pseudomonas putida major facilitator family transporter pp0702 SWALL:AAN66327 (EMBL:AE016776) (385 aa) fasta scores: E(): 3.2e-42, 39.62% id in 371 aa, and to Rhizobium loti probable transporter mll1210 SWALL:Q98L25 (EMBL:AP002996) (393 aa) fasta scores: E(): 2.8e-21, 27.82% id in 381 aa. (388 aa)    
Predicted Functional Partners:
ECA3952
Similar to Pseudomonas putida transcriptional regulator, LysR family pp0698 SWALL:AAN66323 (EMBL:AE016776) (305 aa) fasta scores: E(): 3.1e-76, 64.93% id in 288 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator gcva or b2808 or c3378 or z4125 or ecs3668 SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 6.4e-26, 33.67% id in 297 aa; Belongs to the LysR transcriptional regulatory family.
 
     0.751
ECA3888
Similar to Yersinia pestis hypothetical protein Ypo0462 SWALL:Q8ZIN3 (EMBL:AJ414142) (258 aa) fasta scores: E(): 5.4e-78, 79.76% id in 257 aa, and to Escherichia coli O6 protein yaaa or c0010 SWALL:AAN78510 (EMBL:AE016755) (258 aa) fasta scores: E(): 1.7e-77, 80.15% id in 257 aa; Belongs to the UPF0246 family.
  
    0.634
ECA3840
Similar to Yersinia pestis hypothetical protein y5204 or y1108 or ypmt1.54 SWALL:O68768 (EMBL:AF053947) (187 aa) fasta scores: E(): 7.6e-34, 56.88% id in 167 aa.
  
     0.505
ECA1624
Hypothetical plasmid protein; No significant database matches.
  
     0.504
ECA3951
LysE-type translocator; Similar to Pseudomonas putida transporter, LysE family pp0699 SWALL:AAN66324 (EMBL:AE016776) (204 aa) fasta scores: E(): 5.4e-51, 66.01% id in 203 aa, and to Rhizobium meliloti putative amino acid efflux transmembrane protein r03051 or smc02484 SWALL:Q92LJ7 (EMBL:AL591792) (214 aa) fasta scores: E(): 1.5e-25, 39.8% id in 206 aa.
       0.430
betI
TetR-family transcriptional regulator; Repressor involved in the biosynthesis of the osmoprotectant glycine betaine. It represses transcription of the choline transporter BetT and the genes of BetAB involved in the synthesis of glycine betaine (By similarity).
  
     0.420
ECA3724
Conserved phage-related protein; Similar to Salmonella typhi hypothetical protein Sty1620 SWALL:Q8Z6U6 (EMBL:AL627270) (317 aa) fasta scores: E(): 1.3e-89, 75.07% id in 317 aa.
  
     0.405
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.