STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3958Probable transporter; Similar to Pseudomonas aeruginosa probable MFS transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.2e-54, 44.2% id in 371 aa, and to Streptomyces capreolus hypothetical protein SWALL:CAD62207 (EMBL:X84374) (436 aa) fasta scores: E(): 8.2e-57, 44.53% id in 375 aa. (410 aa)    
Predicted Functional Partners:
ECA3957
Putative hydrolase; Similar to Clostridium perfringens hypothetical protein Cpe0762 cpe0762 SWALL:Q8XMC7 (EMBL:AP003188) (230 aa) fasta scores: E(): 2.8e-26, 34.8% id in 227 aa, and to Bacillus subtilis YfnB yfnB SWALL:O06480 (EMBL:D86418) (235 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa.
       0.773
ECA3959
ArsR-family transcriptional regulator; Similar to Lactococcus lactis transcription regulator yrfa or ll1694 SWALL:Q9CEY9 (EMBL:AE006400) (100 aa) fasta scores: E(): 2.1e-10, 39.78% id in 93 aa, and to Rhizobium loti hypothetical protein Mll3509 SWALL:Q98G33 (EMBL:AP003002) (100 aa) fasta scores: E(): 7.9e-11, 47.61% id in 84 aa.
 
     0.514
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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