STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3959ArsR-family transcriptional regulator; Similar to Lactococcus lactis transcription regulator yrfa or ll1694 SWALL:Q9CEY9 (EMBL:AE006400) (100 aa) fasta scores: E(): 2.1e-10, 39.78% id in 93 aa, and to Rhizobium loti hypothetical protein Mll3509 SWALL:Q98G33 (EMBL:AP003002) (100 aa) fasta scores: E(): 7.9e-11, 47.61% id in 84 aa. (107 aa)    
Predicted Functional Partners:
ECA3960
Putative hydrolase; Similar to Rhizobium loti hypothetical protein Mll5179 SWALL:Q98CE8 (EMBL:AP003005) (271 aa) fasta scores: E(): 1.5e-60, 55.72% id in 262 aa, and to Streptomyces coelicolor possible oxidoreductase sco0526 or scf11.06 SWALL:Q9RK83 (EMBL:AL939105) (277 aa) fasta scores: E(): 3.5e-44, 46.69% id in 257 aa.
 
     0.812
ECA3961
Similar to Rhizobium loti hypothetical protein Mll1199 SWALL:Q98L32 (EMBL:AP002996) (204 aa) fasta scores: E(): 3.2e-11, 29.01% id in 193 aa, and to Rhizobium meliloti putative transcriptional regulator protein rb1009 or smb21569 SWALL:Q92US9 (EMBL:AL603645) (199 aa) fasta scores: E(): 1.1e-06, 27.55% id in 196 aa.
 
    0.647
copA
Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa.
  
  
 0.585
ECA3958
Probable transporter; Similar to Pseudomonas aeruginosa probable MFS transporter pa2314 SWALL:Q9I1G1 (EMBL:AE004657) (417 aa) fasta scores: E(): 2.2e-54, 44.2% id in 371 aa, and to Streptomyces capreolus hypothetical protein SWALL:CAD62207 (EMBL:X84374) (436 aa) fasta scores: E(): 8.2e-57, 44.53% id in 375 aa.
 
     0.517
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.486
ECA3957
Putative hydrolase; Similar to Clostridium perfringens hypothetical protein Cpe0762 cpe0762 SWALL:Q8XMC7 (EMBL:AP003188) (230 aa) fasta scores: E(): 2.8e-26, 34.8% id in 227 aa, and to Bacillus subtilis YfnB yfnB SWALL:O06480 (EMBL:D86418) (235 aa) fasta scores: E(): 5e-24, 34.34% id in 230 aa.
       0.452
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.