STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3986AraC-family transcriptional regulator; Similar to Bordetella pertussis AlcR SWALL:O52066 (EMBL:AF018255) (324 aa) fasta scores: E(): 1.6e-31, 38.85% id in 314 aa, and to Salmonella typhi AraC-family transcriptional regulator sty0395 SWALL:Q8Z909 (EMBL:AL627266) (334 aa) fasta scores: E(): 2.3e-66, 57.72% id in 317 aa. (318 aa)    
Predicted Functional Partners:
foxA
Ferrioxamine B receptor; Similar to Salmonella typhimurium ferrioxamine B receptor precursor fFoxA or stm0364 SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 1.8e-207, 74.35% id in 702 aa.
     0.856
ECA3160
Similar to Salmonella typhimurium putative transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 3.8e-14, 38.68% id in 137 aa, and to Salmonella typhi putative DNA-binding protein sty2429 SWALL:Q8Z5A0 (EMBL:AL627273) (129 aa) fasta scores: E(): 4.4e-14, 38.68% id in 137 aa.
  
     0.629
ECA2787
Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti putative transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa.
  
     0.464
ECA2819
Hypothetical protein; Weakly similar to Bacillus subtilis hypothetical protein YsfE SWALL:P94533 (EMBL:Z75208) (80 aa) fasta scores: E(): 0.92, 30% id in 60 aa.
  
     0.457
dltB
Peptidoglycan biosynthesis protein; Similar to Bacillus subtilis protein DltB or ipa-4R SWALL:DLTB_BACSU (SWALL:P39580) (395 aa) fasta scores: E(): 3.9e-24, 31% id in 400 aa, and to Staphylococcus epidermidis DltB membrane protein se0625 SWALL:AAO04222 (EMBL:AE016746) (404 aa) fasta scores: E(): 1.1e-23, 28.9% id in 346 aa; Belongs to the membrane-bound acyltransferase family.
  
     0.454
ECA3506
Similar to Ralstonia solanacearum hypothetical protein rsp0306 or rs05465 SWALL:Q8XT11 (EMBL:AL646077) (199 aa) fasta scores: E(): 2.7e-17, 35.13% id in 185 aa, and to Bradyrhizobium japonicum Bll6575 protein Bll6575 SWALL:BAC51840 (EMBL:AP005959) (254 aa) fasta scores: E(): 1.7e-09, 31.65% id in 199 aa.
  
     0.447
ECA1659
Probable plasmid-related protein; Similar to Lactococcus lactis nicking enzyme SWALL:O87207 (EMBL:AE001272) (680 aa) fasta scores: E(): 2.9e-20, 33.77% id in 302 aa, and to Escherichia coli O6 hypothetical protein c2397 SWALL:AAN80856 (EMBL:AE016762) (500 aa) fasta scores: E(): 2.9e-119, 64.98% id in 477 aa, and to Thiobacillus ferrooxidans mobilization protein MobL mobL SWALL:MOBL_THIFE (SWALL:P20085) (378 aa) fasta scores: E(): 3.7e-09, 28.23% id in 294 aa.
  
     0.435
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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