Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA3993Similar to Yersinia pestis putative transferase y4029 SWALL:AAM87573 (EMBL:AE014004) (193 aa) fasta scores: E(): 3.4e-50, 76.3% id in 173 aa, and to Salmonella typhi putative transferase yrda or sty4398 SWALL:Q8Z1W3 (EMBL:AL627282) (184 aa) fasta scores: E(): 6.7e-50, 74.43% id in 176 aa. (182 aa)    
Predicted Functional Partners:
ECA1048
Similar to Escherichia coli hypothetical protein yaer or b0187 SWALL:YAER_ECOLI (SWALL:P52096) (129 aa) fasta scores: E(): 1.2e-37, 71.87% id in 128 aa, and to Shigella flexneri orf, conserved hypothetical protein yaer or sf0177 SWALL:AAN41839 (EMBL:AE015054) (138 aa) fasta scores: E(): 1.3e-37, 71.87% id in 128 aa.
      0.686
ppa
Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
 
      0.560
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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