STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bfrBacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (157 aa)    
Predicted Functional Partners:
bfd
Bacterioferritin-associated ferredoxin; Similar to Escherichia coli, and Escherichia coli O6 bacterioferritin-associated ferredoxin Bfd or b3337 or c4108 SWALL:BFD_ECOLI (SWALL:P13655) (64 aa) fasta scores: E(): 4.1e-13, 56.25% id in 64 aa.
 
 
 0.937
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.930
nasA
Nitrate reductase; Similar to Klebsiella pneumoniae nitrate reductase NasA SWALL:NASA_KLEPN (SWALL:Q06457) (866 aa) fasta scores: E(): 3.4e-170, 56.46% id in 882 aa, and to Agrobacterium tumefaciens nitrate reductase large subunit NasA or atu3900 or agr_l_1895 SWALL:Q8U930 (EMBL:AE009320) (903 aa) fasta scores: E(): 9e-163, 53.77% id in 887 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.734
exbD
Biopolymer transport protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri biopolymer transport ExbD protein SWALL:EXBD_ECOLI (SWALL:P18784) (141 aa) fasta scores: E(): 2.1e-36, 68.79% id in 141 aa.
      
 0.584
ECA3604
Similar to Yersinia pestis putative exported protein ypo2981 SWALL:Q8ZCK3 (EMBL:AJ414154) (137 aa) fasta scores: E(): 7.6e-20, 42.3% id in 130 aa, and to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein ypec or stm2407 or sty2648 SWALL:Q8XFD1 (EMBL:AE008808) (108 aa) fasta scores: E(): 1.2e-08, 37.16% id in 113 aa.
   
  
 0.575
uspA
Universal stress protein A; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri universal stress protein A UspA or b3495 or c4293 or z4895 or ecs4367 or sf3526 SWALL:USPA_ECOLI (SWALL:P28242) (143 aa) fasta scores: E(): 6.7e-47, 94.36% id in 142 aa.
      
 0.568
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction.
   
  
 0.508
mrdB
Rod shape-determining protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
      
 0.506
ftsQ
Cell division protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
      
 0.506
ftsW
Cell division protein; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily.
      
 0.492
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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