STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4053Putative short chain dehydrogenase; Similar to Agrobacterium tumefaciens dehydrogenase atu5210 or agr_pat_293 SWALL:Q8UKB3 (EMBL:AE008943) (259 aa) fasta scores: E(): 9.5e-62, 65.11% id in 258 aa, and to Rhizobium meliloti sma1629 protein ra0888 or sma1629 SWALL:Q92YJ2 (EMBL:AE007275) (259 aa) fasta scores: E(): 1.4e-64, 70.86% id in 254 aa. (259 aa)    
Predicted Functional Partners:
ECA4052
Similar to Rhizobium loti hypothetical protein Mlr3986 SWALL:Q98F14 (EMBL:AP003003) (109 aa) fasta scores: E(): 1.3e-15, 47.22% id in 108 aa, and to Agrobacterium tumefaciens hypothetical protein atu5209 or agr_pat_291 SWALL:Q8UKB4 (EMBL:AE008943) (109 aa) fasta scores: E(): 1.4e-12, 40.18% id in 107 aa.
 
     0.945
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.704
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.704
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
 
 0.700
ECA1208
Probable short chain dehydrogenase; Similar to Rhizobium meliloti putative sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 7.1e-51, 57.04% id in 291 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 1.4e-40, 55.83% id in 240 aa.
  
     0.690
ECA1209
Probable short chain dehydrogenase; Similar to Rhizobium meliloti putative sdr family dehydrogenase protein rb0961 or smb21383 SWALL:Q92UX4 (EMBL:AL603645) (296 aa) fasta scores: E(): 1e-56, 60.87% id in 299 aa, and to Xanthomonas axonopodis short chain dehydrogenase xac0083 SWALL:Q8PR80 (EMBL:AE011631) (245 aa) fasta scores: E(): 2.6e-45, 57.5% id in 240 aa.
  
     0.688
ECA2704
Putative phenazine antibiotic biosynthesis protein; Similar to Streptomyces aureofaciens oxygenase-like protein aur2G SWALL:Q93M01 (EMBL:AY033994) (285 aa) fasta scores: E(): 1.2e-38, 45.56% id in 259 aa, and to Rhizobium loti oxidoreductase of short-chain mlr1595 SWALL:Q98K81 (EMBL:AP002997) (279 aa) fasta scores: E(): 2.9e-44, 49.8% id in 255 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.664
ECA1979
Probable short-chain dehydrogenase; Similar to Rhizobium loti short-chain oxidoreductase mlr2473 SWALL:Q98IB9 (EMBL:AP002999) (276 aa) fasta scores: E(): 4.8e-55, 57.87% id in 273 aa, and to Xanthomonas campestris short chain oxidoreductase xcc4175 SWALL:Q8P3A1 (EMBL:AE012543) (290 aa) fasta scores: E(): 3.6e-51, 54.44% id in 270 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.611
ECA3214
Probable short chain dehydrogenase; Similar to Bacillus subtilis 3-oxoacyl-[acyl-carrier protein] reductase FabG SWALL:FABG_BACSU (SWALL:P51831) (246 aa) fasta scores: E(): 4.4e-24, 38.24% id in 251 aa, and to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc1730 or rs02918 SWALL:Q8XYM8 (EMBL:AL646066) (256 aa) fasta scores: E(): 1.8e-51, 59.91% id in 247 aa.
  
     0.606
ECA1586
Similar to Ralstonia solanacearum probable dehydrogenase/reductase oxidoreductase protein rsc2597 or rs00845 SWALL:Q8XW78 (EMBL:AL646070) (252 aa) fasta scores: E(): 7.9e-79, 84.92% id in 252 aa, and to Xanthomonas campestris reductase xcc3212 SWALL:Q8P5X1 (EMBL:AE012438) (276 aa) fasta scores: E(): 1.6e-41, 52.19% id in 251 aa.
  
     0.564
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.