STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkBPhosphoribulokinase; Similar to Alcaligenes eutrophus phosphoribulokinase, plasmid CfxP SWALL:KPPP_ALCEU (SWALL:P19924) (291 aa) fasta scores: E(): 6.8e-62, 56.69% id in 284 aa, and to Escherichia coli, and Shigella flexneri probable phosphoribulokinase PrkB or b3355 or sf3374 SWALL:KPPR_ECOLI (SWALL:P37307) (289 aa) fasta scores: E(): 8.9e-100, 86.15% id in 289 aa. (289 aa)    
Predicted Functional Partners:
ECA4060
Putative hydrolase; Similar to Yersinia pestis hypothetical protein ypo0180 or y3961 SWALL:AAM87505 (EMBL:AJ414141) (326 aa) fasta scores: E(): 1.3e-103, 73.31% id in 326 aa, and to Escherichia coli O157:H7 orf, hypothetical protein yhet or z4714 or ecs4204 SWALL:Q8X873 (EMBL:AE005558) (340 aa) fasta scores: E(): 3.5e-95, 69.27% id in 319 aa.
     
 0.571
ECA4061
Similar to Yersinia pestis hypothetical protein ypo0179 or y3960 SWALL:AAM87504 (EMBL:AJ414141) (78 aa) fasta scores: E(): 1.1e-19, 73.97% id in 73 aa, and to Salmonella typhi hypothetical protein yheu or sty4334 SWALL:Q8Z1Z0 (EMBL:AL627281) (72 aa) fasta scores: E(): 1.2e-19, 77.14% id in 70 aa; Belongs to the UPF0270 family.
       0.560
rpe
Ribulose-phosphate 3-epimerase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri ribulose-phosphate 3-epimerase Rpe or Dod or b3386 or c4156 or z4739 or ecs4228 or sf3404 SWALL:RPE_ECOLI (SWALL:P32661) (225 aa) fasta scores: E(): 5.1e-71, 83.92% id in 224 aa.
  
  
 0.482
fbp
Fructose-1,6-bisphosphatase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri fructose-1,6-bisphosphatase Fbp or Fdp or b4232 or c5329 or sf4258 SWALL:F16P_ECOLI (SWALL:P09200) (332 aa) fasta scores: E(): 2.6e-110, 86.82% id in 334 aa.
 
  
 0.464
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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