STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4074Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa. (307 aa)    
Predicted Functional Partners:
ECA4073
ABC transporter ATP binding protein; Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3457 or agr_l_2743 SWALL:Q8UAB7 (EMBL:AE009276) (278 aa) fasta scores: E(): 6.5e-62, 65.07% id in 272 aa, and to Rhizobium meliloti putative dipeptide transport ATP-binding ABC transporter protein dppd2 or r02410 or smc01528 SWALL:Q92N29 (EMBL:AL591790) (277 aa) fasta scores: E(): 3e-58, 61.99% id in 271 aa.
  
 0.967
ECA4075
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3459 or agr_l_2740 SWALL:Q8UAB5 (EMBL:AE009276) (360 aa) fasta scores: E(): 2.4e-83, 63.15% id in 342 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppb2 or r02412 or smc01526 SWALL:Q92N27 (EMBL:AL591790) (347 aa) fasta scores: E(): 1.7e-70, 56.4% id in 328 aa.
  
 0.963
ECA4072
ABC transporter ATP-binding protein; Similar to Rhizobium meliloti putative dipeptide transport ATP-binding ABC transporter protein dppf2 or r02409 or smc01529 SWALL:Q92N30 (EMBL:AL591790) (255 aa) fasta scores: E(): 4.6e-46, 53.93% id in 254 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3456 or agr_l_2744 SWALL:Q8UAB8 (EMBL:AE009276) (259 aa) fasta scores: E(): 4e-46, 53.06% id in 245 aa.
  
 0.936
oppD
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or stm1743 SWALL:OPPD_SALTY (SWALL:P04285) (335 aa) fasta scores: E(): 3.4e-102, 86.29% id in 321 aa; Belongs to the ABC transporter superfamily.
  
 0.920
dppD
Dipeptide transport ATP-binding protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri dipeptide transport ATP-binding protein DppD or b3541 or z4958 or ecs4421 or sf3576 SWALL:DPPD_ECOLI (SWALL:P37314) (327 aa) fasta scores: E(): 1.9e-103, 88.07% id in 327 aa; Belongs to the ABC transporter superfamily.
  
 0.917
ECA4076
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3455 or agr_l_2748 SWALL:Q8UAB9 (EMBL:AE009275) (549 aa) fasta scores: E(): 1.1e-105, 50.65% id in 535 aa, and to Rhizobium meliloti putative dipeptide binding periplasmic protein dppa2 or r02413 or smc01525 SWALL:Q92N26 (EMBL:AL591790) (546 aa) fasta scores: E(): 2.5e-43, 38.6% id in 531 aa.
 
   0.899
ECA2960
Similar to Rhizobium loti probable peptide ABC transporter ATP-binding abc transporter protein msi192 SWALL:Q8KJF3 (EMBL:AL672113) (335 aa) fasta scores: E(): 1.6e-55, 52.81% id in 320 aa, and to Bacillus halodurans oligopeptide ABC transporter appd or bh0350 SWALL:Q9KFX0 (EMBL:AP001508) (329 aa) fasta scores: E(): 6.5e-57, 53.53% id in 325 aa.
  
 0.890
oppF
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF or stm1742 SWALL:OPPF_SALTY (SWALL:P08007) (334 aa) fasta scores: E(): 1.9e-108, 85.88% id in 333 aa; Belongs to the ABC transporter superfamily.
  
 0.847
ECA0136
Similar to Escherichia coli hypothetical ABC transporter permease protein ylic or b0831 SWALL:YLIC_ECOLI (SWALL:P75798) (306 aa) fasta scores: E(): 4.3e-64, 52.94% id in 306 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1381 or rs04750 SWALL:Q8XZL4 (EMBL:AL646064) (307 aa) fasta scores: E(): 5.6e-63, 54.6% id in 304 aa.
  
 0.842
ECA0447
Similar to Xanthomonas axonopodis ABC transporter permease oppC SWALL:Q8PP31 (EMBL:AE011717) (325 aa) fasta scores: E(): 2e-42, 43.27% id in 305 aa, and to Salmonella typhi hypothetical ABC transporter permease protein yliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.1e-34, 36.36% id in 308 aa.
  
 0.841
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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