STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occQOctopine transport system permease protein; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine transport system permease protein OccQ SWALL:OCCQ_AGRTU (SWALL:P35119) (237 aa) fasta scores: E(): 3e-44, 51.94% id in 231 aa, and to Rhizobium meliloti octopine transport system permease protein OccQ SWALL:OCCQ_RHIME (SWALL:P72295) (237 aa) fasta scores: E(): 9.3e-43, 50.64% id in 233 aa. (242 aa)    
Predicted Functional Partners:
occP
Octopine permease ATP-binding protein P; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine permease ATP-binding protein P OccP SWALL:OCCP_AGRTU (SWALL:P35117) (262 aa) fasta scores: E(): 4.5e-56, 63.85% id in 249 aa.
 
 
 0.992
occJ
Octopine-binding periplasmic protein; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine-binding periplasmic protein precursor OccT or OccJ SWALL:OCCT_AGRTU (SWALL:P35121) (276 aa) fasta scores: E(): 1.3e-38, 46.01% id in 276 aa, and to Rhizobium meliloti octopine-binding periplasmic protein precursor OccT SWALL:OCCT_RHIME (SWALL:P72298) (294 aa) fasta scores: E(): 5.7e-33, 43.34% id in 293 aa.
 0.977
occM
Similar to Agrobacterium tumefaciens octopine transport system permease protein OccM SWALL:OCM2_AGRTU (SWALL:P35115) (245 aa) fasta scores: E(): 1e-50, 60.44% id in 225 aa, and to Rhizobium meliloti octopine transport system permease protein OccM occM SWALL:OCCM_RHIME (SWALL:P72296) (245 aa) fasta scores: E(): 1.2e-50, 60.81% id in 222 aa.
 
 
0.975
hisP
Similar to Escherichia coli histidine transport ATP-binding protein HisP or b2306 SWALL:HISP_ECOLI (SWALL:P07109) (257 aa) fasta scores: E(): 1.5e-73, 82.87% id in 257 aa.
 
  
 0.840
artI
Similar to Escherichia coli arginine-binding periplasmic protein 1 precursor ArtI or b0863 SWALL:ARTI_ECOLI (SWALL:P30859) (243 aa) fasta scores: E(): 4e-67, 72.42% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.808
artJ
Similar to Escherichia coli arginine-binding periplasmic protein 2 precursor ArtJ or b0860 SWALL:ARTJ_ECOLI (SWALL:P30860) (243 aa) fasta scores: E(): 1.1e-71, 78.6% id in 243 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.797
hisJ
Histidine-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 1.8e-69, 73.28% id in 262 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.783
ECA0828
Putative amino acid-binding periplasmic protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 histidine-binding periplasmic protein precursor HisJ or b2309 or c2851 or z3571 or ecs3193 SWALL:HISJ_ECOLI (SWALL:P39182) (260 aa) fasta scores: E(): 8.9e-35, 38.22% id in 259 aa, and to Pseudomonas aeruginosa periplasmic histidine-binding protein HisJ or pa2923 SWALL:Q9HZS4 (EMBL:AE004718) (261 aa) fasta scores: E(): 2.8e-35, 40.15% id in 259 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.779
ECA0247
Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.2e-23, 36.01% id in 261 aa, and to Lactobacillus fermentum basic surface protein SWALL:O06530 (EMBL:U97348) (264 aa) fasta scores: E(): 6.2e-28, 37.97% id in 266 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.738
aapM
Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 6.9e-63, 51.37% id in 364 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdy or b3270 SWALL:YHDY_ECOLI (SWALL:P45768) (367 aa) fasta scores: E(): 1.4e-116, 81.37% id in 349 aa.
 
  0.730
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.