STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgBSimilar to Escherichia coli aminobenzoyl-glutamate utilization protein B AbgB or b1337 SWALL:ABGB_ECOLI (SWALL:P76052) (481 aa) fasta scores: E(): 3.5e-63, 47.23% id in 470 aa. (502 aa)    
Predicted Functional Partners:
ECA1004
Probable hydrolase; Similar to Campylobacter jejuni hippurate hydrolase HipO or cj0985C SWALL:HIPO_CAMJE (SWALL:P45493) (383 aa) fasta scores: E(): 1.9e-48, 40.41% id in 386 aa, and to Rhizobium meliloti putative amidohydrolase, similar to hippurate hydrolase protein rb0783 or smb21279 SWALL:Q92VC5 (EMBL:AL603644) (389 aa) fasta scores: E(): 1.9e-65, 49.48% id in 386 aa.
 
   0.648
occJ
Octopine-binding periplasmic protein; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine-binding periplasmic protein precursor OccT or OccJ SWALL:OCCT_AGRTU (SWALL:P35121) (276 aa) fasta scores: E(): 1.3e-38, 46.01% id in 276 aa, and to Rhizobium meliloti octopine-binding periplasmic protein precursor OccT SWALL:OCCT_RHIME (SWALL:P72298) (294 aa) fasta scores: E(): 5.7e-33, 43.34% id in 293 aa.
  
    0.634
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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