STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4097Similar to Yersinia pestis putative membrane protein ypo0147 SWALL:Q8ZJG1 (EMBL:AJ414141) (201 aa) fasta scores: E(): 7e-07, 25.77% id in 194 aa, and to Salmonella typhi putative membrane protein yrfc or sty4305 SWALL:Q8Z209 (EMBL:AL627281) (179 aa) fasta scores: E(): 6.7e-05, 29.25% id in 147 aa. (189 aa)    
Predicted Functional Partners:
ECA4098
Similar to Yersinia pestis hypothetical protein ypo0146 or y3925 SWALL:Q8ZJG2 (EMBL:AJ414141) (313 aa) fasta scores: E(): 7.5e-48, 45.54% id in 292 aa, and to Salmonella typhi hypothetical protein yrfd or t4014 SWALL:AAO71484 (EMBL:AE016847) (259 aa) fasta scores: E(): 8.5e-14, 29.74% id in 279 aa.
  
 0.990
hofQ
Putative type II secretion system protein; Similar to Escherichia coli protein transport protein HofQ precursor HofQ or HopQ or b3391 SWALL:HOFQ_ECOLI (SWALL:P34749) (412 aa) fasta scores: E(): 3.1e-71, 52.3% id in 390 aa, and to Yersinia pestis putative membrane transport protein ypo0150 or hofq or y3932 SWALL:Q8ZJF8 (EMBL:AJ414141) (374 aa) fasta scores: E(): 3.9e-84, 62.89% id in 380 aa.
  
 
 0.960
ECA4095
Putative exported protein; Similar to Yersinia pestis putative membrane protein ypo0149 SWALL:Q8ZJF9 (EMBL:AJ414141) (122 aa) fasta scores: E(): 0.013, 29.41% id in 85 aa.
       0.804
ECA4096
Putative membrane protein; Similar to Yersinia pestis hypothetical y3928 SWALL:AAM87472 (EMBL:AE013997) (208 aa) fasta scores: E(): 5, 23.78% id in 185 aa.
       0.804
mrcA
Similar to Escherichia coli penicillin-binding protein 1A MrcA or PonA or b3396 SWALL:PBPA_ECOLI (SWALL:P02918) (850 aa) fasta scores: E(): 0, 77.9% id in 851 aa.
       0.622
ECA3626
Putative type II/IV secretion system protein; Similar to Escherichia coli hypothetical protein yggr or b2950 SWALL:YGGR_ECOLI (SWALL:P52052) (326 aa) fasta scores: E(): 4e-63, 60.67% id in 328 aa, and to Yersinia pestis hypothetical protein Ypo0940 SWALL:Q8ZHF9 (EMBL:AJ414145) (358 aa) fasta scores: E(): 1.4e-65, 60.92% id in 325 aa.
  
  
 0.578
ECA2558
Similar to Yersinia pestis putative membrane protein ypo1394 or y2778 SWALL:Q8ZGB0 (EMBL:AJ414148) (763 aa) fasta scores: E(): 7.2e-161, 50.19% id in 763 aa, and to Salmonella typhi putative competence-related protein sty0984 SWALL:Q8Z802 (EMBL:AL627268) (754 aa) fasta scores: E(): 7.2e-126, 42.52% id in 762 aa.
      
 0.571
outO
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.569
pilQ
Putative Type IV pilus nucleotide-binding protein; Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa.
  
 
 0.519
outE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.519
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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