STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pckAPhosphoenolpyruvate carboxykinase; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family. (539 aa)    
Predicted Functional Partners:
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
 
 0.933
eno
Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis.
  
 
 0.933
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
     
 0.930
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
     
 0.930
mqo
Similar to Escherichia coli malate:quinone oxidoreductase Mqo or b2210 SWALL:MQO_ECOLI (SWALL:P33940) (548 aa) fasta scores: E(): 2.3e-143, 69.73% id in 522 aa, and to Pseudomonas aeruginosa probable malate:quinone oxidoreductase 1 Mqo1 or MqoA or pa3452 SWALL:MQO1_PSEAE (SWALL:Q9HYF4) (523 aa) fasta scores: E(): 5e-145, 69.06% id in 527 aa.
    
 0.926
gltA
Citrate synthase; Similar to Escherichia coli, and Escherichia coli O6 citrate synthase GltA or GluT or IcdB or b0720 or c0796 SWALL:CISY_ECOLI (SWALL:P00891) (427 aa) fasta scores: E(): 3.3e-160, 87.55% id in 426 aa.
  
 
 0.921
ECA4121
Citrate synthase; Similar to Escherichia coli, and Escherichia coli O6 citrate synthase GltA or GluT or IcdB or b0720 or c0796 SWALL:CISY_ECOLI (SWALL:P00891) (427 aa) fasta scores: E(): 2e-119, 63.91% id in 424 aa.
  
 
 0.921
aspA1
Aspartate ammonia-lyase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri aspartate ammonia-lyase AspA or b4139 or c5222 or sf4293 SWALL:ASPA_ECOLI (SWALL:P04422) (478 aa) fasta scores: E(): 7.8e-167, 88.05% id in 477 aa. Also similar to ECA0621 (91.195% id. in 477 aa overlap).
  
 
 0.918
pykF
Pyruvate kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 pyruvate kinase I PykF or b1676 or z2704 or ecs2383 SWALL:KPY1_ECOLI (SWALL:P14178) (470 aa) fasta scores: E(): 4.4e-139, 84.68% id in 470 aa.
    
 0.917
pykA
Pyruvate kinase II; Similar to Escherichia coli pyruvate kinase ii PykA or b1854 SWALL:KPY2_ECOLI (SWALL:P21599) (479 aa) fasta scores: E(): 2.7e-156, 91.23% id in 479 aa.
    
 0.917
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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