Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA4110Similar to Yersinia pestis putative periplasmic substrate-binding transport protein ypo1310 SWALL:Q8ZGI7 (EMBL:AJ414147) (381 aa) fasta scores: E(): 3.8e-43, 34.91% id in 358 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3391 or agr_l_2862 SWALL:Q8UAI2 (EMBL:AE009269) (377 aa) fasta scores: E(): 3.1e-81, 52.18% id in 366 aa. (383 aa)    
Predicted Functional Partners:
ECA3243
Putative ferric-enterobactin ABC transporter ATP-binding protein; Similar to Escherichia coli ferric-enterobactin-transport protein SWALL:Q8VR78 (EMBL:AF447814) (255 aa) fasta scores: E(): 7.9e-59, 67.05% id in 255 aa, and to Yersinia pestis putative siderophore ABC transporter, ATP-binding subunit ypo1312 or yiuc or y2873 SWALL:AAM86424 (EMBL:AJ414147) (262 aa) fasta scores: E(): 1.4e-74, 81.15% id in 260 aa.
 
 0.876
ECA3242
ABC transporter permease (FecCD-family); Similar to Yersinia pestis putative feccd-family membrane transport protein ypo1311 or yiub or y2874 SWALL:Q8ZGI6 (EMBL:AJ414147) (360 aa) fasta scores: E(): 2.2e-108, 81.66% id in 360 aa, and to Salmonella typhimurium putative ABC transport protein stm0770 SWALL:Q8ZQS4 (EMBL:AE008731) (359 aa) fasta scores: E(): 2.2e-94, 72.06% id in 358 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.828
ECA4111
Probable transporter; Similar to Rhizobium fredii Y4xM SWALL:Q8RQC1 (EMBL:AF229441) (404 aa) fasta scores: E(): 8.6e-66, 49.87% id in 389 aa, and to Rhizobium sp. hypothetical transport protein y4xM SWALL:Y4XM_RHISN (SWALL:P55705) (404 aa) fasta scores: E(): 1.9e-66, 49.74% id in 392 aa.
 
     0.812
ECA4109
Conserved hypothetical protein; Similar to Rhizobium fredii Y4yB SWALL:Q9EUG6 (EMBL:AF229441) (142 aa) fasta scores: E(): 8.8e-12, 38.58% id in 127 aa, and to Ralstonia solanacearum hypothetical protein rsp0413 or rs00870 SWALL:Q8XSQ4 (EMBL:AL646078) (146 aa) fasta scores: E(): 3.2e-29, 55.97% id in 134 aa.
 
     0.651
ECA3094
Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa.
 
 0.629
ECA4112
Putative octopine/opine/tauropine dehydrogenase; Similar to Arthrobacter sp. opine dehydrogenase Odh SWALL:ODH_ARTSP (SWALL:Q44297) (359 aa) fasta scores: E(): 0.53, 26.42% id in 352 aa, and to Rhizobium fredii Y4xO SWALL:Q8RQB9 (EMBL:AF229441) (406 aa) fasta scores: E(): 2.7e-78, 54.83% id in 372 aa, and to Haliotis discus hannai tauropine dehydrogenase TadH SWALL:Q8N0N9 (EMBL:AB085184) (405 aa) fasta scores: E(): 6.1e-16, 24.33% id in 374 aa, and to Pecten maximus octopine dehydrogenase Odh1 SWALL:Q9BHM6 (EMBL:AJ237916) (399 aa) fasta scores: E(): 1.3e-12, 24.39% id in 369 aa.
 
    0.624
ECA4114
Similar to Selenomonas ruminantium lysine/ornithine decarboxylase Ldc SWALL:DCLO_SELRU (SWALL:O50657) (393 aa) fasta scores: E(): 4.2e-06, 26.53% id in 245 aa, and to Rhizobium fredii Y4yA SWALL:Q9EUG5 (EMBL:AF229441) (450 aa) fasta scores: E(): 6.6e-73, 49.08% id in 438 aa.
 
     0.611
ECA4115
Similar to Ralstonia solanacearum probable ferric siderophore receptor protein rsp0414 or rs00871 SWALL:Q8XSQ3 (EMBL:AL646078) (746 aa) fasta scores: E(): 2.3e-136, 51.09% id in 734 aa, and to Vibrio anguillarum ferric anguibactin receptor precursor fatA SWALL:FATA_VIBAN (SWALL:P11461) (726 aa) fasta scores: E(): 3.5e-79, 35.45% id in 722 aa.
 
  
 0.592
ECA4113
Similar to Streptomyces venezuelae cystathionine beta-synthase cbssV SWALL:Q9EYM7 (EMBL:AF319543) (463 aa) fasta scores: E(): 1.5e-28, 36.81% id in 326 aa, and to Rhizobium fredii Y4xP SWALL:Q8RQB8 (EMBL:AF229441) (336 aa) fasta scores: E(): 1.6e-81, 69.06% id in 333 aa.
       0.564
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
  
 0.528
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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