STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4115Similar to Ralstonia solanacearum probable ferric siderophore receptor protein rsp0414 or rs00871 SWALL:Q8XSQ3 (EMBL:AL646078) (746 aa) fasta scores: E(): 2.3e-136, 51.09% id in 734 aa, and to Vibrio anguillarum ferric anguibactin receptor precursor fatA SWALL:FATA_VIBAN (SWALL:P11461) (726 aa) fasta scores: E(): 3.5e-79, 35.45% id in 722 aa. (731 aa)    
Predicted Functional Partners:
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
  
  
 0.823
ECA0058
Transmembrane sensor; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 3.1e-33, 36.04% id in 319 aa.
 
  
 0.734
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.719
ECA4112
Putative octopine/opine/tauropine dehydrogenase; Similar to Arthrobacter sp. opine dehydrogenase Odh SWALL:ODH_ARTSP (SWALL:Q44297) (359 aa) fasta scores: E(): 0.53, 26.42% id in 352 aa, and to Rhizobium fredii Y4xO SWALL:Q8RQB9 (EMBL:AF229441) (406 aa) fasta scores: E(): 2.7e-78, 54.83% id in 372 aa, and to Haliotis discus hannai tauropine dehydrogenase TadH SWALL:Q8N0N9 (EMBL:AB085184) (405 aa) fasta scores: E(): 6.1e-16, 24.33% id in 374 aa, and to Pecten maximus octopine dehydrogenase Odh1 SWALL:Q9BHM6 (EMBL:AJ237916) (399 aa) fasta scores: E(): 1.3e-12, 24.39% id in 369 aa.
 
     0.719
ECA1273
Putative sensor protein; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 2.9e-18, 30.09% id in 309 aa, and to Pseudomonas aeruginosa probable transmembrane sensor pa0471 SWALL:Q9I647 (EMBL:AE004485) (323 aa) fasta scores: E(): 8.9e-27, 32.58% id in 313 aa.
 
  
 0.716
ECA1274
Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 1.6e-22, 47.13% id in 157 aa, and to Pseudomonas aeruginosa putative RNA polymerase sigma factor pa2050 SWALL:Q9I265 (EMBL:AE004631) (168 aa) fasta scores: E(): 2.1e-27, 49.35% id in 156 aa; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.701
ECA1487
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SyrE SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 43.13% id in 6600 aa, and to Anabaena sp. 90 peptide synthetase AdpB SWALL:Q9K5M1 (EMBL:AJ269505) (5060 aa) fasta scores: E(): 2.8e-208, 34.22% id in 4859 aa.
  
  
 0.701
ECA1488
Non-ribosomal peptide synthetase; Similar to Pseudomonas syringae syringomycin synthetase SWALL:O85168 (EMBL:AF047828) (9376 aa) fasta scores: E(): 0, 42.92% id in 7655 aa, and to Pseudomonas sp. MIS38 arthrofactin synthetase c arfC SWALL:BAC67536 (EMBL:AB107223) (5924 aa) fasta scores: E(): 0, 46.8% id in 5469 aa.
  
  
 0.701
ECA4116
Similar to Escherichia coli aerobactin siderophore biosynthesis protein IucC SWALL:IUCC_ECOLI (SWALL:Q47318) (580 aa) fasta scores: E(): 9.5e-19, 29.59% id in 321 aa, and to Legionella pneumophila FrgA SWALL:P94901 (EMBL:U76559) (575 aa) fasta scores: E(): 2.6e-18, 23.43% id in 542 aa.
 
  
 0.698
ECA4114
Similar to Selenomonas ruminantium lysine/ornithine decarboxylase Ldc SWALL:DCLO_SELRU (SWALL:O50657) (393 aa) fasta scores: E(): 4.2e-06, 26.53% id in 245 aa, and to Rhizobium fredii Y4yA SWALL:Q9EUG5 (EMBL:AF229441) (450 aa) fasta scores: E(): 6.6e-73, 49.08% id in 438 aa.
 
     0.697
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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