STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4117Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 4.4e-11, 30.13% id in 302 aa, and to Brucella melitensis citrate lyase beta chain bmeii1074 SWALL:Q8YB27 (EMBL:AE009739) (274 aa) fasta scores: E(): 1.3e-22, 40.71% id in 280 aa; Belongs to the HpcH/HpaI aldolase family. (293 aa)    
Predicted Functional Partners:
citF
Similar to Klebsiella pneumoniae citrate lyase alpha chain CitF SWALL:CILA_KLEPN (SWALL:P45413) (508 aa) fasta scores: E(): 1.3e-132, 67.52% id in 508 aa, and to Escherichia coli citrate lyase alpha chain citf or b0615 SWALL:CILA_ECOLI (SWALL:P75726) (510 aa) fasta scores: E(): 4.6e-131, 67.25% id in 510 aa.
 
  
 0.938
citD
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
  
 0.937
citX
Similar to Escherichia coli, and Escherichia coli O157:H7 apo-citrate lyase phosphoribosyl-dephospho-CoA transferase citx or b0614 or z0758 or ecs0653 SWALL:CITX_ECOLI (SWALL:P77563) (183 aa) fasta scores: E(): 6.7e-24, 40.85% id in 164 aa.
 
  
 0.931
citE
Similar to Klebsiella pneumoniae citrate lyase beta chain CitE SWALL:CILB_KLEPN (SWALL:P17725) (289 aa) fasta scores: E(): 1.3e-80, 72.56% id in 288 aa, and to Escherichia coli, and Escherichia coli O6 citrate lyase beta chain CitE or b0616 or c0706 SWALL:CILB_ECOLI (SWALL:P77770) (302 aa) fasta scores: E(): 2.7e-74, 65.17% id in 290 aa; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.926
citC
[citrate [pro-3s]-lyase] ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
 
  
 0.925
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Catalyzes the formation of 2-(5''-triphosphoribosyl)-3'- dephosphocoenzyme-A, the precursor of the prosthetic group of the holo- acyl carrier protein (gamma chain) of citrate lyase, from ATP and dephospho-CoA; Belongs to the CitG/MdcB family.
 
  
 0.907
ECA2967
Putative dehydratase; Similar to Bradyrhizobium japonicum Bll6362 protein Bll6362 SWALL:BAC51627 (EMBL:AP005958) (477 aa) fasta scores: E(): 4.9e-07, 26.58% id in 459 aa, and to Rhizobium loti hypothetical protein Mll9010 SWALL:Q982L5 (EMBL:AP003015) (457 aa) fasta scores: E(): 5.4e-07, 26.48% id in 438 aa.
 
  
 0.633
ECA3784
Similar to Agrobacterium tumefaciens hypothetical protein atu3361 or agr_l_2924 SWALL:Q8UAL2 (EMBL:AE009266) (448 aa) fasta scores: E(): 5.1e-53, 42.42% id in 462 aa, and to Bacillus subtilis hypothetical protein yxeq or lp9I SWALL:YXEQ_BACSU (SWALL:P54956) (445 aa) fasta scores: E(): 3.3e-43, 40.5% id in 400 aa.
 
  
 0.562
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
   
    0.552
araD
Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD or b0061 SWALL:ARAD_ECOLI (SWALL:P08203) (231 aa) fasta scores: E(): 5.3e-74, 77.48% id in 231 aa.
   
    0.552
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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