STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
kduI24-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (278 aa)    
Predicted Functional Partners:
kdgF
Similar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis putative pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa.
 
  
  0.975
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
     
 0.969
kduD
2-keto-3-deoxygluconate oxidoreductase; Similar to Pectobacterium carotovorum subsp. atrosepticum 2-keto-3-deoxygluconate oxidoreductase KduD SWALL:Q8KHI5 (EMBL:AJ506783) (253 aa) fasta scores: E(): 6.3e-94, 98.41% id in 253 aa, and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SWALL:KDUD_ERWCH (SWALL:Q05528) (253 aa) fasta scores: E(): 4.4e-87, 89.72% id in 253 aa.
 
 
 0.948
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
     
 0.941
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
     
  0.878
uxaC
Uronate isomerase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri uronate isomerase UxaC or b3092 or c3850 or sf3132 SWALL:UXAC_ECOLI (SWALL:P42607) (470 aa) fasta scores: E(): 8.6e-183, 89.33% id in 469 aa.
 
   
 0.790
uxaB1
Altronate oxidoreductase; Similar to Escherichia coli, and Escherichia coli O157:H7 altronate oxidoreductase UxaB or b1521 or z2184 or ecs2128 SWALL:UXAB_ECOLI (SWALL:P24214) (483 aa) fasta scores: E(): 2e-148, 72.54% id in 488 aa, and to Yersinia pestis altronate oxidoreductase UxaB SWALL:AAM87147 (EMBL:AJ414143) (483 aa) fasta scores: E(): 3e-163, 80.28% id in 487 aa. Also similar to ECA4383 (69.278% id. in 485 aa overlap); Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
   
 0.731
pehN
Similar to Erwinia chrysanthemi putative polygalacturonase precursor PehN SWALL:Q8KKH7 (EMBL:AJ292044) (457 aa) fasta scores: E(): 9.4e-151, 80.13% id in 458 aa; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.703
ECA1051
Similar to Yersinia pestis hypothetical protein Ypo1065 SWALL:Q8ZH46 (EMBL:AJ414146) (182 aa) fasta scores: E(): 2.4e-56, 75.28% id in 178 aa, and to Escherichia coli O6 hypothetical protein yaeq or c0229 SWALL:AAN78721 (EMBL:AE016755) (181 aa) fasta scores: E(): 6e-48, 62.22% id in 180 aa.
   
    0.701
uxaA
Similar to Escherichia coli altronate hydrolase UxaA SWALL:UXAA_ECOLI (SWALL:P42604) (495 aa) fasta scores: E(): 4.1e-163, 80.24% id in 496 aa.
 
  
 0.688
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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