STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA4128Similar to Pseudomonas putida ABC transporter, ATP-binding protein, putative pp2317 SWALL:AAN67930 (EMBL:AE016782) (228 aa) fasta scores: E(): 5.5e-24, 42.85% id in 224 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical ABC transporter ATP-binding protein ybba or b0495 or z0648 or ecs0557 or sf0439 SWALL:AAN42094 (EMBL:AE000155) (228 aa) fasta scores: E(): 3.7e-24, 44.09% id in 220 aa. (230 aa)    
Predicted Functional Partners:
ECA4127
Putative permease; Similar to Pseudomonas putida ABC efflux transporter, permease protein, putative pp0506 SWALL:AAN66134 (EMBL:AE016775) (421 aa) fasta scores: E(): 3.1e-13, 30.02% id in 423 aa, and to Vibrio cholerae hypothetical protein Vc2554 SWALL:Q9KP25 (EMBL:AE004324) (421 aa) fasta scores: E(): 2.7e-10, 27.86% id in 427 aa.
 
 0.939
ECA4129
Putative exported protein; Similar to Deinococcus radiodurans hypothetical protein Drb0048 SWALL:Q9RZR7 (EMBL:AE001826) (152 aa) fasta scores: E(): 9.8e-20, 48.36% id in 122 aa.
 
     0.881
ECA4130
Alkaline phosphatase; Similar to Schizophyllum commune alkaline phosphatase Pho1 SWALL:Q9UR10 (EMBL:AF209194) (604 aa) fasta scores: E(): 5.3e-20, 32.91% id in 477 aa, and to Schizosaccharomyces pombe alkaline phosphatase spbc14f5.13C SWALL:PPB_SCHPO (SWALL:O60109) (532 aa) fasta scores: E(): 8.8e-15, 26.68% id in 491 aa.
 
     0.823
ECA1513
Putative permease; Similar to Yersinia pestis similar to ABC transporter: eg ybjz_ecoli hypothetical ABC transporter ypo1944 or y2366 SWALL:AAM85924 (EMBL:AL031866) (430 aa) fasta scores: E(): 9.9e-137, 81.86% id in 430 aa, and to Pasteurella multocida hypothetical protein Pm0450 SWALL:Q9CNI1 (EMBL:AE006080) (440 aa) fasta scores: E(): 4.2e-79, 67.95% id in 440 aa.
 
 0.763
lolA
Outer-membrane lipoproteins carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.751
lolC
Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 lipoprotein releasing system transmembrane protein LolC or b1116 or c1391 or z1757 or ecs1494 SWALL:LOLC_ECOLI (SWALL:P75956) (399 aa) fasta scores: E(): 1.7e-115, 79.75% id in 400 aa.
  
 0.696
lolE
Similar to Escherichia coli lipoprotein releasing system transmembrane protein LolE or b1118 SWALL:LOLE_ECOLI (SWALL:P75958) (413 aa) fasta scores: E(): 9.5e-123, 79.31% id in 411 aa.
  
 0.696
rpsK
30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
   
 0.684
macB
Macrolide-specific ABC-type efflux carrier; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 0.682
ECA1514
Putative permease; Similar to Yersinia pestis putative integral membrane protein y2365 SWALL:Q8D0D2 (EMBL:AE013839) (406 aa) fasta scores: E(): 5.3e-111, 83.06% id in 372 aa, and to Pasteurella multocida hypothetical protein Pm0449 SWALL:Q9CNI2 (EMBL:AE006080) (371 aa) fasta scores: E(): 1.3e-90, 67.92% id in 371 aa.
 
 0.659
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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