STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpRSimilar to Escherichia coli glycerol-3-phosphate regulon repressor GlpR or b3423 SWALL:GLPR_ECOLI (SWALL:P09392) (252 aa) fasta scores: E(): 4.8e-76, 76.58% id in 252 aa. (252 aa)    
Predicted Functional Partners:
glpG
Putative membrane protein; Rhomboid-type serine protease that catalyzes intramembrane proteolysis.
     
 0.710
fruK
1-phosphofructokinase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 1-phosphofructokinase FruK or Fpk or b2168 or c2703 or z3426 or ecs3060 or sf2253 SWALL:K1PF_ECOLI (SWALL:P23539) (312 aa) fasta scores: E(): 7.8e-108, 90.7% id in 312 aa; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.698
fruA
Similar to Escherichia coli pts system, fructose-specific IIbc component FruA or PtsF or b2167 SWALL:PTFB_ECOLI (SWALL:P20966) (563 aa) fasta scores: E(): 1.4e-146, 75.13% id in 567 aa.
 
  
 0.693
malP
Maltodextrin phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
       0.641
glpD
Similar to Escherichia coli aerobic glycerol-3-phosphate dehydrogenase GlpD or GlyD or b3426 SWALL:GLPD_ECOLI (SWALL:P13035) (501 aa) fasta scores: E(): 9e-157, 76.59% id in 500 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.624
malQ
4-alpha-glucanotransferase; Similar to Escherichia coli 4-alpha-glucanotransferase MalQ or MalA or b3416 SWALL:MALQ_ECOLI (SWALL:P15977) (694 aa) fasta scores: E(): 2.9e-166, 55.95% id in 688 aa.
       0.594
ECA3519
Putative acyl-CoA synthetase; Similar to Yersinia pestis putative acetyltransferase ypo3272 SWALL:Q8ZBW2 (EMBL:AJ414156) (880 aa) fasta scores: E(): 0, 79.56% id in 881 aa, and to Escherichia coli hypothetical protein yfiq or b2584 SWALL:YFIQ_ECOLI (SWALL:P76594) (886 aa) fasta scores: E(): 0, 76.84% id in 881 aa.
    
   0.521
glpE
Thiosulfate sulfurtransferase; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
       0.518
ECA1465
Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium putative inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa.
 
  
 0.450
glpA
Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri anaerobic glycerol-3-phosphate dehydrogenase subunit A GlpA or b2241 or z3499 or ecs3126 or sf2323 SWALL:GLPA_ECOLI (SWALL:P13032) (542 aa) fasta scores: E(): 1.1e-153, 72.34% id in 546 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.409
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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