STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4142Putative RHS accessory genetic element; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 1.5e-106, 47.15% id in 615 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 4.8e-124, 51.84% id in 652 aa. (675 aa)    
Predicted Functional Partners:
ECA3445
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpB SWALL:Q93ED2 (EMBL:AF361470) (181 aa) fasta scores: E(): 2.6e-09, 32.66% id in 150 aa, and to Yersinia pestis conserved hypothetical protein y0037 SWALL:AAM83632 (EMBL:AE013605) (166 aa) fasta scores: E(): 5.6e-39, 68.71% id in 163 aa.
 
  
 0.916
ECA3441
Similar to Vibrio cholerae hypothetical protein Vca0111 SWALL:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 1.1e-59, 46.8% id in 329 aa, and to Yersinia pestis hypothetical protein Ypo3594 SWALL:Q8ZB35 (EMBL:AJ414157) (349 aa) fasta scores: E(): 2.5e-47, 54.6% id in 326 aa.
 
  
 0.893
ECA3444
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpC SWALL:Q93ED1 (EMBL:AF361470) (493 aa) fasta scores: E(): 6.4e-63, 37.36% id in 479 aa, and to Yersinia pestis hypothetical protein ypo3706 ypo3706 or y0038 SWALL:Q8ZAT4 (EMBL:AJ414158) (493 aa) fasta scores: E(): 3.1e-158, 78.09% id in 493 aa.
 
  
 0.892
ECA3443
Similar to Yersinia pestis hypothetical protein ypo3705 or y0039 SWALL:Q8ZAT5 (EMBL:AJ414158) (146 aa) fasta scores: E(): 2.3e-22, 45.71% id in 140 aa, and to Escherichia coli O157:H7 hypothetical protein z0261 or ecs0230 SWALL:Q8X7U0 (EMBL:AE005198) (137 aa) fasta scores: E(): 3.6e-14, 36.76% id in 136 aa.
 
  
 0.878
ECA3442
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa.
 
  
 0.876
ECA3438
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 7.8e-61, 40.04% id in 447 aa, and to Vibrio cholerae hypothetical protein Vca0114 SWALL:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.7e-104, 60.04% id in 443 aa.
 
  
 0.872
ECA3432
Putative virulence-associated protein; Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 1.3e-19, 25.08% id in 1200 aa, and to Escherichia coli O157:H7 putative macrophage toxin z0250 or ecs0218 SWALL:Q8X7W9 (EMBL:AE005197) (1144 aa) fasta scores: E(): 7.8e-112, 44.66% id in 1153 aa, and to Photorhabdus luminescens Pmt1 SWALL:AAN64194 (EMBL:AY144117) (1181 aa) fasta scores: E(): 1.3e-127, 44.42% id in 1184 aa, and to Legionella pneumophila IcmF protein IcmF SWALL:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 7.8e-16, 20.74% id in 969 aa.
 
  
 0.860
ECA3426
Putative phospholipase; Similar to Serratia liquefaciens extracellular phospholipase A1 precursor PhlA SWALL:PA1_SERLI (SWALL:P18952) (319 aa) fasta scores: E(): 4.2e-06, 30.09% id in 216 aa, and to Xanthomonas campestris phospholipase A1 xcc2722 SWALL:Q8P791 (EMBL:AE012385) (398 aa) fasta scores: E(): 3e-09, 33.82% id in 204 aa.
 
   
 0.856
ECA3437
Putative membrane protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis putative membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa.
 
  
 0.849
ECA3433
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf1 SWALL:AAN64193 (EMBL:AY144117) (334 aa) fasta scores: E(): 1e-39, 39.56% id in 321 aa, and to Vibrio cholerae hypothetical protein Vca0119 SWALL:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 2.8e-42, 34.05% id in 464 aa.
 
  
 0.845
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.