STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4157Similar to Yersinia pestis putative membrane protein ypo3950 or y3879 SWALL:Q8ZA68 (EMBL:AJ414159) (194 aa) fasta scores: E(): 7.1e-61, 85.56% id in 194 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yhgn or b3434 or z4798 or ecs4279 or sf3457 SWALL:YHGN_ECOLI (SWALL:P46851) (197 aa) fasta scores: E(): 2.6e-59, 78.06% id in 196 aa. (197 aa)    
Predicted Functional Partners:
ECA4156
Hypothetical protein; No significant database matches.
       0.773
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.592
bspA
Putative mechanosensitive ion channel; Similar to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 0, 77.97% id in 1108 aa, and to Yersinia pestis putative membrane transport protein ypo0363 or y0619 SWALL:AAM84207 (EMBL:AJ414142) (1119 aa) fasta scores: E(): 0, 71.54% id in 1114 aa.
  
    0.414
ECA3118
Putative mechanosensitive ion channel protein; Similar to Pseudomonas putida membrane protein, putative pp0707 SWALL:AAN66332 (EMBL:AE016776) (855 aa) fasta scores: E(): 7.4e-106, 43.1% id in 798 aa, and to Xanthomonas campestris hypothetical protein Xcc0402 SWALL:Q8PDD8 (EMBL:AE012136) (821 aa) fasta scores: E(): 4e-50, 30.14% id in 806 aa, and to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 1.5e-22, 22.75% id in 813 aa.
  
    0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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