STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhtBHomoserine/homoserine lactone efflux protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri homoserine/homoserine lactone efflux protein RhtB or b3824 or c4746 or z5345 or ecs4754 or sf3902 SWALL:RHTB_ECOLI (SWALL:P27847) (206 aa) fasta scores: E(): 1.1e-63, 77.18% id in 206 aa. Also similar to ECA0827 (RhtB) (36.019% id. in 211 aa overlap). (206 aa)    
Predicted Functional Partners:
ECA2050
Putative membrane protein; Similar to Vibrio vulnificus putative threonine efflux protein vv12697 SWALL:AAO11043 (EMBL:AE016806) (211 aa) fasta scores: E(): 2.3e-12, 30.73% id in 205 aa, and to Vibrio cholerae hypothetical protein Vc1421 SWALL:Q9KS40 (EMBL:AE004221) (212 aa) fasta scores: E(): 1.3e-09, 25.51% id in 196 aa.
  
     0.710
pldB
Lysophospholipase L2; Similar to Escherichia coli lysophospholipase L2 PldB or b3825 SWALL:PLDB_ECOLI (SWALL:P07000) (340 aa) fasta scores: E(): 3e-78, 59.56% id in 324 aa.
       0.534
ECA0616
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein 6 pa2916 SWALL:Q9HZT1 (EMBL:AE004718) (197 aa) fasta scores: E(): 1.2e-35, 47.93% id in 194 aa, and to Pseudomonas putida membrane protein, putative pp2429 SWALL:AAN68041 (EMBL:AE016783) (194 aa) fasta scores: E(): 1.9e-31, 44.61% id in 195 aa.
  
     0.447
ECA4059
Putative membrane protein; Similar to Yersinia pestis putative ABC-transport protein ypo0181 SWALL:Q8ZJD2 (EMBL:AJ414141) (200 aa) fasta scores: E(): 4.2e-65, 80.5% id in 200 aa, and to Shewanella oneidensis transporter, lyse family so1716 SWALL:AAN54770 (EMBL:AE015617) (197 aa) fasta scores: E(): 9e-24, 36.73% id in 196 aa.
  
     0.438
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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