STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4175Similar to Yersinia pestis putative membrane protein ypo3836 SWALL:Q8ZAG6 (EMBL:AJ414159) (296 aa) fasta scores: E(): 1.9e-90, 76.68% id in 296 aa, and to Escherichia coli protein RarD or b3819 SWALL:RARD_ECOLI (SWALL:P27844) (296 aa) fasta scores: E(): 5e-85, 70.94% id in 296 aa. (309 aa)    
Predicted Functional Partners:
ECA4174
Similar to Yersinia pestis hypothetical protein ypo3835 or y0395 SWALL:Q8ZAG7 (EMBL:AJ414159) (156 aa) fasta scores: E(): 1.4e-35, 63.39% id in 153 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yigi or b3820 or c4741 or sf3898 SWALL:YIGI_ECOLI (SWALL:P27845) (155 aa) fasta scores: E(): 1.6e-35, 64.9% id in 151 aa.
  
    0.598
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.