STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4192Putative peptidase; Similar to Sulfolobus solfataricus thermostable carboxypeptidase 1 CpsA1 or CpsA-1 or CpsA or sso1355 SWALL:CBP1_SULSO (SWALL:P80092) (393 aa) fasta scores: E(): 6.5e-42, 36.93% id in 379 aa, and to Zymomonas mobilis amino acid amido hydrolase SWALL:Q9FDK6 (EMBL:AF212041) (380 aa) fasta scores: E(): 2.3e-67, 46.93% id in 375 aa. (385 aa)    
Predicted Functional Partners:
ECA4193
Similar to Bacillus subtilis probable amino-acid ABC transporter ATP-binding protein YxeO or lp9G SWALL:YXEO_BACSU (SWALL:P54954) (249 aa) fasta scores: E(): 1.6e-51, 63.2% id in 250 aa, and to Clostridium acetobutylicum ABC-type polar amino acid transport system, ATPase component cac0879 SWALL:Q97KN8 (EMBL:AE007603) (243 aa) fasta scores: E(): 4.7e-45, 57.43% id in 242 aa.
  
    0.571
ECA4194
Similar to Vibrio harveyi probable amino-acid ABC transporter permease protein PatM SWALL:PATM_VIBHA (SWALL:P52625) (223 aa) fasta scores: E(): 2.3e-36, 47.98% id in 223 aa, and to Bacillus subtilis probable amino-acid ABC transporter permease protein yxen or lp9F SWALL:YXEN_BACSU (SWALL:P54953) (224 aa) fasta scores: E(): 1.2e-45, 57.07% id in 219 aa.
  
    0.563
ECA4196
Putative acetyltransferase; Similar to Bacillus subtilis hypothetical protein yxel or lp9D SWALL:YXEL_BACSU (SWALL:P54951) (165 aa) fasta scores: E(): 1.2e-30, 49.69% id in 165 aa, and to Listeria innocua hypothetical protein Lin2444 lin2444 SWALL:Q928T8 (EMBL:AL596172) (178 aa) fasta scores: E(): 1.6e-20, 38.18% id in 165 aa.
 
     0.509
dapD
Similar to Escherichia coli, and Shigella flexneri 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase DapD or b0166 or sf0156 SWALL:DAPD_ECOLI (SWALL:P03948) (274 aa) fasta scores: E(): 4.7e-99, 91.94% id in 273 aa, and to Salmonella typhimurium 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase DapD or stm0213 SWALL:Q8ZRP4 (EMBL:AE008704) (274 aa) fasta scores: E(): 2e-98, 90.11% id in 273 aa; Belongs to the transferase hexapeptide repeat family.
 
  
 0.473
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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