Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ECA4193Similar to Bacillus subtilis probable amino-acid ABC transporter ATP-binding protein YxeO or lp9G SWALL:YXEO_BACSU (SWALL:P54954) (249 aa) fasta scores: E(): 1.6e-51, 63.2% id in 250 aa, and to Clostridium acetobutylicum ABC-type polar amino acid transport system, ATPase component cac0879 SWALL:Q97KN8 (EMBL:AE007603) (243 aa) fasta scores: E(): 4.7e-45, 57.43% id in 242 aa. (253 aa)    
Predicted Functional Partners:
ECA4194
Similar to Vibrio harveyi probable amino-acid ABC transporter permease protein PatM SWALL:PATM_VIBHA (SWALL:P52625) (223 aa) fasta scores: E(): 2.3e-36, 47.98% id in 223 aa, and to Bacillus subtilis probable amino-acid ABC transporter permease protein yxen or lp9F SWALL:YXEN_BACSU (SWALL:P54953) (224 aa) fasta scores: E(): 1.2e-45, 57.07% id in 219 aa.
  0.999
ECA4195
Similar to Vibrio harveyi putative amino-acid ABC transporter binding protein PatH precursor PatH SWALL:PATH_VIBHA (SWALL:P52626) (248 aa) fasta scores: E(): 1.6e-27, 39.6% id in 255 aa, and to Bacillus subtilis probable amino-acid ABC transporter binding protein yxem precursor yxem or lp9E SWALL:YXEM_BACSU (SWALL:P54952) (264 aa) fasta scores: E(): 4.7e-48, 53.28% id in 259 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 0.999
ECA2969
Similar to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 9.4e-32, 44.29% id in 219 aa, and to Bacillus halodurans ABC transporter bh1462 SWALL:Q9KCV7 (EMBL:AP001512) (218 aa) fasta scores: E(): 1.4e-28, 40.74% id in 216 aa.
  0.852
ECA2968
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein glnp glnp or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.3e-22, 38.46% id in 221 aa, and to Bradyrhizobium japonicum ABC transporter permease protein blr8118 SWALL:BAC53383 (EMBL:AP005964) (220 aa) fasta scores: E(): 3.9e-29, 40.18% id in 219 aa.
 
  0.843
glnP
Glutamine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glutamine transport system permease protein GlnP or b0810 or c0895 or z1032 or ecs0888 or sf0761 SWALL:GLNP_ECOLI (SWALL:P10345) (219 aa) fasta scores: E(): 1.9e-69, 84.01% id in 219 aa.
  0.834
ECA4479
Similar to Ralstonia solanacearum probable amino acid transmembrane ABC transporter protein rsp0933 or rs05400 SWALL:Q8XRC5 (EMBL:AL646081) (248 aa) fasta scores: E(): 2.3e-55, 60.26% id in 229 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4282 or agr_l_1163 SWALL:Q8U817 (EMBL:AE009356) (252 aa) fasta scores: E(): 1.1e-50, 56.38% id in 227 aa.
 
 0.832
gltK
Glutamate/aspartate transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glutamate/aspartate transport system permease protein GltK or b0653 or c0737 or z0803 or ecs0692 SWALL:GLTK_ECOLI (SWALL:P41075) (224 aa) fasta scores: E(): 2.2e-73, 84.75% id in 223 aa.
 
 0.831
ECA0855
Similar to Rhizobium sp. TAL1145 mimosine transporter permease MidB SWALL:Q9EYT1 (EMBL:AF312768) (234 aa) fasta scores: E(): 6.8e-38, 52.52% id in 198 aa, and to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 1.8e-46, 46.2% id in 290 aa.
  0.823
ECA4480
Probable amino acid ABC transporter, permease protein; Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 2.8e-19, 30.94% id in 223 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4281 or agr_l_1164 SWALL:Q8U818 (EMBL:AE009356) (235 aa) fasta scores: E(): 9.3e-48, 57.01% id in 221 aa.
 
  0.822
ECA2154
Similar to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 5e-36, 39.6% id in 303 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-61, 57.86% id in 299 aa.
  0.808
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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