STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4198Putative exported phosphatase; Similar to Pseudomonas syringae phytase PhyM SWALL:AAN77879 (EMBL:AY156083) (428 aa) fasta scores: E(): 3.4e-77, 48.73% id in 433 aa, and to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 1.5e-31, 31.08% id in 415 aa. (435 aa)    
Predicted Functional Partners:
ECA0351
Probable nitroreductase; Similar to Bacillus subtilis nitro/flavin reductase NfrA or NfrA1 or Ipa-43D SWALL:NFRA_BACSU (SWALL:P39605) (249 aa) fasta scores: E(): 5.2e-19, 29.83% id in 248 aa, and to Clostridium acetobutylicum ortholog ycnd b.subtilis, nitroreductase cac0718 SWALL:Q97L47 (EMBL:AE007587) (246 aa) fasta scores: E(): 1.2e-42, 45.49% id in 244 aa; Belongs to the flavin oxidoreductase frp family.
 
  
  0.953
fre
NAD(P)H-flavin reductase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 NAD(P)H-flavin reductase Fre or FlrD or FadI or FsrC or UbiB or b3844 or c4791 or z5365 or ecs4772 SWALL:FRE_ECOLI (SWALL:P23486) (232 aa) fasta scores: E(): 5.8e-71, 75.86% id in 232 aa.
     
  0.944
ECA1923
Riboflavin synthase alpha chain; Similar to Escherichia coli, and Shigella flexneri riboflavin synthase alpha chain RibE or RibC or b1662 or sf1690 SWALL:RISA_ECOLI (SWALL:P29015) (213 aa) fasta scores: E(): 7e-61, 76.84% id in 203 aa.
     
  0.944
ribF
Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri riboflavin biosynthesis protein ribf [includes: riboflavin kinase; FMN adenylyltransferase] RibF or b0025 or c0029 or z0029 or ecs0028 or sf0021 SWALL:RIBF_ECOLI (SWALL:P08391) (313 aa) fasta scores: E(): 2.3e-89, 76.03% id in 313 aa.
     
  0.944
ECA4180
Putative hydrolase; Similar to Escherichia coli, and Shigella flexneri hypothetical protein yigb or b3812 or sf3890 SWALL:YIGB_ECOLI (SWALL:P23306) (238 aa) fasta scores: E(): 1.4e-60, 66.8% id in 238 aa, and to Yersinia pestis putative haloacid dehalogenase-like hydrolase ypo3842 or y0388 SWALL:Q8ZAG0 (EMBL:AJ414159) (238 aa) fasta scores: E(): 3.4e-60, 66.38% id in 238 aa.
     
  0.944
ECA2016
Similar to Rhizobium loti hypothetical protein Mlr7774 SWALL:Q984Z9 (EMBL:AP003012) (263 aa) fasta scores: E(): 7.7e-06, 25.4% id in 248 aa.
  
     0.661
ECA2062
Putative phosphatase; Similar to Salmonella typhimurium putative phosphatase stm3595 SWALL:Q8ZLD5 (EMBL:AE008866) (423 aa) fasta scores: E(): 2.3e-84, 55.37% id in 437 aa.
 
  
 0.626
ECA0266
Similar to Yersinia pestis putative exported protein ypo3664 SWALL:Q8ZAW7 (EMBL:AJ414158) (638 aa) fasta scores: E(): 3.6e-144, 55.91% id in 642 aa, and to Escherichia coli O6 hypothetical protein YhdA SWALL:AAN82448 (EMBL:AE016767) (646 aa) fasta scores: E(): 1.8e-137, 52.85% id in 649 aa.
  
   
 0.605
pgm
Phosphoglucomutase; Similar to Escherichia coli phosphoglucomutase Pgm or b0688 SWALL:PGMU_ECOLI (SWALL:P36938) (546 aa) fasta scores: E(): 5e-188, 87.72% id in 546 aa.
     
 0.580
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
     
 0.563
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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