STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4220Similar to Streptomyces coelicolor hypothetical protein sco0965 or scm11.20C SWALL:Q9RIU2 (EMBL:AL939107) (219 aa) fasta scores: E(): 1.8e-24, 45.21% id in 188 aa, and to Rhizobium loti hypothetical protein Mll0243 SWALL:Q98N90 (EMBL:AP002994) (231 aa) fasta scores: E(): 4.1e-19, 40% id in 195 aa. (208 aa)    
Predicted Functional Partners:
ECA2382
Similar to Ralstonia solanacearum putative transmemembrane reductase oxidoreductase protein rsp1147 or rs05455 SWALL:Q8XQS2 (EMBL:AL646083) (208 aa) fasta scores: E(): 4.5e-24, 43.81% id in 210 aa, and to Streptomyces coelicolor putative reductase sco0967 or scm11.22C SWALL:Q9RIU0 (EMBL:AL939107) (207 aa) fasta scores: E(): 5.2e-16, 39.89% id in 188 aa.
  
     0.762
ECA4219
Similar to Rhizobium loti probable transcriptional regulator mlr0244 SWALL:Q98N89 (EMBL:AP002994) (308 aa) fasta scores: E(): 2.1e-52, 49.83% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1146 or rs05458 SWALL:Q8XQS3 (EMBL:AL646083) (298 aa) fasta scores: E(): 2e-47, 47.49% id in 299 aa; Belongs to the LysR transcriptional regulatory family.
 
     0.617
ECA0923
Similar to Synechocystis sp. hypothetical protein slr0317 SWALL:Q55924 (EMBL:D64005) (287 aa) fasta scores: E(): 3.1e-18, 31.95% id in 291 aa, and to Rhizobium loti hypothetical protein mll1871 SWALL:Q98JM9 (EMBL:AP002998) (293 aa) fasta scores: E(): 2.1e-17, 29.49% id in 295 aa, and to Escherichia coli hypothetical protein YtfG SWALL:YTFG_ECOLI (SWALL:P39315) (286 aa) fasta scores: E(): 1.9e-12, 29.23% id in 236 aa.
  
    0.421
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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