STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxyRSimilar to Erwinia carotovora hydrogen peroxide-inducible genes activator OxyR SWALL:OXYR_ERWCA (SWALL:P71318) (302 aa) fasta scores: E(): 5.9e-118, 99% id in 302 aa, and to Erwinia chrysanthemi hydrogen peroxide-inducible genes activator OxyR SWALL:OXYR_ERWCH (SWALL:Q9X725) (305 aa) fasta scores: E(): 4.9e-114, 95.68% id in 301 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hydrogen peroxide-inducible genes activator OxyR or MomR or Mor or b3961 or c4922 or z5519 or ecs4890 SWALL:OXYR_ECOLI (SWALL:P11721) (305 aa) fasta scores: E(): 1.3e-106, 89.4% id i [...] (302 aa)    
Predicted Functional Partners:
ECA4427
LysR-family transcriptional regulator; Similar to Agrobacterium tumefaciens regulatory protein NocR or atu6029 or agr_pti_70 SWALL:NOCR_AGRT5 (SWALL:Q00678) (300 aa) fasta scores: E(): 1.4e-28, 35.29% id in 289 aa, and to Rhizobium meliloti octopine catabolism/uptake operon regulatory protein OccR SWALL:OCCR_RHIME (SWALL:P72294) (297 aa) fasta scores: E(): 5.8e-23, 36.58% id in 287 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.714
tdrA
Similar to Serratia marcescens putative temperature-dependent regulator A TdrA SWALL:Q8VUI0 (EMBL:AB077386) (303 aa) fasta scores: E(): 1.9e-100, 82.5% id in 303 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator yhcs or b3243 or c3998 or z4602 or ecs4116 SWALL:YHCS_ECOLI (SWALL:P45691) (309 aa) fasta scores: E(): 2.1e-97, 80.06% id in 311 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.702
ECA0922
Similar to Pseudomonas syringae transcriptional regulator, LusR family pspto1618 SWALL:Q886G1 (EMBL:AE016861) (302 aa) fasta scores: E(): 2e-62, 53.53% id in 297 aa, and to Yersinia pestis putative transcriptional regulator mlr2579 SWALL:Q93AB4 (EMBL:AF426171) (303 aa) fasta scores: E(): 3.7e-44, 44.33% id in 300 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.699
ECA2381
Similar to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 3.6e-40, 39.79% id in 299 aa, and to Xanthomonas campestris transcriptional regulator xcc3667 SWALL:Q8P4P0 (EMBL:AE012487) (311 aa) fasta scores: E(): 7.8e-40, 41.27% id in 298 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.673
ECA3903
LysR-family transcriptional activator; Similar to Pseudomonas aeruginosa probable transcriptional regulator pa3135 SWALL:Q9HZ90 (EMBL:AE004737) (306 aa) fasta scores: E(): 4.1e-37, 38.92% id in 298 aa, and to Vibrio vulnificus transcriptional regulator vv21654 SWALL:AAO08512 (EMBL:AE016813) (307 aa) fasta scores: E(): 6.3e-35, 39.31% id in 290 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.672
ECA3376
LysR-family transcriptional regulator; Similar to Rhizobium loti transcription regulator mll3011 SWALL:Q98H66 (EMBL:AP003001) (292 aa) fasta scores: E(): 2.1e-49, 48.61% id in 288 aa, and to Pseudomonas putida transcriptional regulator, LysR family pp3811 SWALL:Q88GB3 (EMBL:AE016788) (294 aa) fasta scores: E(): 1e-34, 41.15% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.659
ECA1482
Similar to Rhizobium loti transcriptional regulator mlr0648 SWALL:Q98MB4 (EMBL:AP002995) (311 aa) fasta scores: E(): 4.8e-28, 31.95% id in 291 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa1328 SWALL:Q9I416 (EMBL:AE004562) (302 aa) fasta scores: E(): 3.5e-27, 34.72% id in 288 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.626
ECA4219
Similar to Rhizobium loti probable transcriptional regulator mlr0244 SWALL:Q98N89 (EMBL:AP002994) (308 aa) fasta scores: E(): 2.1e-52, 49.83% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1146 or rs05458 SWALL:Q8XQS3 (EMBL:AL646083) (298 aa) fasta scores: E(): 2e-47, 47.49% id in 299 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.625
lysR
Similar to Escherichia coli transcriptional activator protein LysR or b2839 SWALL:LYSR_ECOLI (SWALL:P03030) (311 aa) fasta scores: E(): 1e-81, 72.48% id in 298 aa; Belongs to the LysR transcriptional regulatory family.
  
     0.607
ECA2848
Similar to Yersinia pestis LysR-family transcriptional regulatory protein ypo0799 or y3187 SWALL:Q8ZHT5 (EMBL:AJ414144) (302 aa) fasta scores: E(): 1.6e-51, 45.81% id in 299 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0056 SWALL:Q9I776 (EMBL:AE004445) (306 aa) fasta scores: E(): 2.2e-53, 46.33% id in 300 aa.
  
     0.605
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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