STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4250Similar to Escherichia coli putrescine transport ATP-binding protein PotG or b0855 SWALL:POTG_ECOLI (SWALL:P31134) (377 aa) fasta scores: E(): 1.2e-43, 41.97% id in 355 aa, and to Bradyrhizobium japonicum ABC transporter ATP-binding protein bll7196 SWALL:BAC52461 (EMBL:AP005961) (365 aa) fasta scores: E(): 1e-45, 44.02% id in 318 aa, and to Rhizobium meliloti putative ABC transporter, ATP-binding protein ra1191 or sma2207 SWALL:Q92XQ3 (EMBL:AE007304) (361 aa) fasta scores: E(): 1.5e-45, 43.42% id in 350 aa. (388 aa)    
Predicted Functional Partners:
ECA4247
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4571 or agr_l_601 SWALL:Q8U783 (EMBL:AE009385) (288 aa) fasta scores: E(): 3.3e-27, 34.36% id in 259 aa, and to Yersinia pestis putative binding-protein-dependent transport system membrane protein ypo2030 or y2280 SWALL:AAM85839 (EMBL:AJ414151) (278 aa) fasta scores: E(): 4.1e-24, 30.62% id in 271 aa.
 
  
  0.885
ECA4249
ABC transporter periplasmic binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 maltose-binding periplasmic protein precursor MalE or b4034 or z5632 or ecs5017 SWALL:MALE_ECOLI (SWALL:P02928) (396 aa) fasta scores: E(): 0.00014, 26.87% id in 387 aa, and to Yersinia pestis putative ABC transporter periplasmic binding protein y2281 SWALL:AAM85840 (EMBL:AE013831) (360 aa) fasta scores: E(): 6.8e-13, 26.11% id in 337 aa.
 
  
  0.843
ECA4248
Similar to Bradyrhizobium japonicum ABC transporter permease protein blr3545 SWALL:BAC48810 (EMBL:AP005948) (293 aa) fasta scores: E(): 1.5e-10, 26.61% id in 278 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu4570 or agr_l_602 SWALL:Q8U784 (EMBL:AE009385) (285 aa) fasta scores: E(): 2e-10, 24.72% id in 275 aa.
 
  
  0.768
ECA3324
Similar to Salmonella typhi ABC transporter integral membrane protein sty0195 SWALL:Q8Z9D6 (EMBL:AL627265) (256 aa) fasta scores: E(): 1.6e-82, 83.59% id in 256 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yadh or b0128 or c0157 or z0139 or ecs0132 or sf0125 SWALL:YADH_ECOLI (SWALL:P36880) (256 aa) fasta scores: E(): 1.3e-81, 82.42% id in 256 aa.
  
 
 0.636
ECA2057
Similar to Yersinia pestis putative ABC transporter permease ypo2841 SWALL:Q8ZCW7 (EMBL:AJ414154) (282 aa) fasta scores: E(): 4.6e-83, 83.64% id in 269 aa, and to Pseudomonas putida polyamine ABC transporter, permease protein pp0414 SWALL:AAN66044 (EMBL:AE016775) (275 aa) fasta scores: E(): 3.4e-63, 65.13% id in 261 aa.
 
  
  0.623
potB
Similar to Escherichia coli, and Shigella flexneri spermidine/putrescine transport system permease protein PotB or b1125 or sf1127 SWALL:POTB_ECOLI (SWALL:P23860) (275 aa) fasta scores: E(): 1.6e-87, 80.72% id in 275 aa.
 
  
  0.604
potC
Spermidine/putrescine transport system permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 spermidine/putrescine transport system permease protein PotC or b1124 or c1399 or z1763 or ecs1500 SWALL:POTC_ECOLI (SWALL:P23859) (264 aa) fasta scores: E(): 1.2e-88, 91.01% id in 256 aa.
 
  
  0.594
sfuC
iron(III)-transport ATP-binding protein; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
  
  
 
0.581
potA-2
Putitive ABC-transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
  
 
0.573
cysP
Similar to Escherichia coli thiosulfate-binding protein precursor CysP or b2425 SWALL:CYSP_ECOLI (SWALL:P16700) (338 aa) fasta scores: E(): 1e-102, 79.34% id in 334 aa.
    
  0.571
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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