STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA4255Similar to Rhizobium loti iron(III) ABC transporter, periplasmic-binding protein mlr8228 SWALL:Q983Q2 (EMBL:AP003013) (315 aa) fasta scores: E(): 8e-77, 62.38% id in 319 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2913 pa2913 SWALL:Q9HZT4 (EMBL:AE004717) (323 aa) fasta scores: E(): 1.3e-50, 45.57% id in 316 aa. (320 aa)    
Predicted Functional Partners:
ECA4254
Putative iron(III) ABC transporter ATP-binding protein; Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 1.2e-25, 37.5% id in 256 aa, and to Brucella melitensis iron(III) dicitrate transport ATP-binding protein bmeii0537 SWALL:Q8YCJ1 (EMBL:AE009689) (264 aa) fasta scores: E(): 6e-28, 42.21% id in 244 aa.
 
 0.963
ECA4256
Putative iron(III) ABC transporter permease protein; Similar to Bordetella avium BhuU bhuU SWALL:Q8L1U4 (EMBL:AY095952) (334 aa) fasta scores: E(): 1.1e-33, 38.8% id in 317 aa, and to Rhizobium loti ABC transporter, permease protein mlr8229 SWALL:Q983Q1 (EMBL:AP003013) (349 aa) fasta scores: E(): 1.3e-61, 54.4% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.959
ECA3095
Similar to Haemophilus influenzae hypothetical ABC transporter permease protein Hi1471 SWALL:YE71_HAEIN (SWALL:Q57130) (337 aa) fasta scores: E(): 3e-65, 53.86% id in 336 aa, and to Pasteurella multocida hypothetical protein Pm1148 SWALL:Q9CLR3 (EMBL:AE006155) (340 aa) fasta scores: E(): 7.2e-70, 57.44% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.753
ECA3094
Similar to Haemophilus influenzae hypothetical ABC transporter ATP-binding protein Hi1470 SWALL:YE70_HAEIN (SWALL:Q57399) (253 aa) fasta scores: E(): 9.5e-36, 46.12% id in 245 aa, and to Pasteurella multocida hypothetical protein Pm1147 SWALL:Q9CLR4 (EMBL:AE006155) (246 aa) fasta scores: E(): 1.2e-38, 47.22% id in 252 aa.
 
 0.735
hmuU
Similar to Yersinia pestis hemin transport system permease protein HmuU or ypo0280 or y0540 SWALL:HMUU_YERPE (SWALL:Q56992) (334 aa) fasta scores: E(): 2.2e-91, 72.34% id in 329 aa; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.712
cbrD
Similar to Erwinia chrysanthemi achromobactin transport ATP-binding protein CbrD SWALL:CBRD_ERWCH (SWALL:Q47087) (273 aa) fasta scores: E(): 3.9e-64, 70.75% id in 253 aa.
 
 0.705
cbrB
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrB SWALL:CBRB_ERWCH (SWALL:Q47085) (340 aa) fasta scores: E(): 8.6e-66, 58.15% id in 325 aa.
 
  0.695
btuC
Vitamin B12 transport system permease; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Involved in the translocation of the substrate across the membrane.
 
 
 0.694
fhuC
Similar to Escherichia coli ferrichrome transport ATP-binding protein FhuC or b0151 SWALL:FHUC_ECOLI (SWALL:P07821) (265 aa) fasta scores: E(): 7.5e-80, 79.92% id in 264 aa.
 
 0.684
cbrC
Similar to Erwinia chrysanthemi achromobactin transport system permease protein CbrC SWALL:CBRC_ERWCH (SWALL:Q47086) (349 aa) fasta scores: E(): 4.9e-69, 61.91% id in 344 aa.
 
  0.670
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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