STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4277Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf5 orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 5.6e-26, 53.33% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 1.6e-15, 41.54% id in 142 aa. (148 aa)    
Predicted Functional Partners:
ECA4278
Rhs-family protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa.
  
 
 0.986
rhs
Putative RHS protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum putative RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa.
  
 
 0.941
ECA4279
Hypothetical protein; No significant database matches.
       0.773
VgrG
Rhs-family protein; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 3.4e-130, 53.79% id in 606 aa, and to Yersinia pestis putative rhs accessory genetic element ypo3606 or y0268 SWALL:AAM83862 (EMBL:AJ414158) (800 aa) fasta scores: E(): 2.2e-123, 51.03% id in 629 aa.
  
  
 0.696
hisI
Similar to Escherichia coli histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase HisI or hisie or b2026 SWALL:HIS2_ECOLI (SWALL:P06989) (203 aa) fasta scores: E(): 2e-64, 80.09% id in 201 aa; In the N-terminal section; belongs to the PRA-CH family.
   
    0.579
ECA1068
Conserved hypothetical protein; Similar to Yersinia pestis hypothetical y4069 SWALL:AAM87613 (EMBL:AE014008) (195 aa) fasta scores: E(): 2.9e-36, 52.38% id in 189 aa, and to Erwinia pyrifoliae conserved hypothetical membrane protein SWALL:AAN04542 (EMBL:AY123045) (178 aa) fasta scores: E(): 4.6e-18, 37.05% id in 170 aa.
  
 
 0.560
ECA1669
Similar to Yersinia pestis hypothetical protein ypo0873 or y3255 SWALL:Q8ZHL8 (EMBL:AJ414145) (512 aa) fasta scores: E(): 4.6e-50, 42.01% id in 545 aa.
  
 
 0.560
ECA2110
Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 3.1e-16, 58.51% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 8.3e-15, 58.51% id in 94 aa.
  
 
 0.560
ECA3478
Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 2.3e-15, 55.31% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 1.7e-13, 53.19% id in 94 aa.
  
 
 0.560
ECA3675
Putative membrane protein; Similar to Yersinia pestis hypothetical protein ypo2788 or y1139 SWALL:Q8ZD09 (EMBL:AJ414153) (193 aa) fasta scores: E(): 5.5e-56, 73.95% id in 192 aa.
  
 
 0.560
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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