Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA4278Rhs-family protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa. (1427 aa)    
Predicted Functional Partners:
ECA4277
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf5 orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 5.6e-26, 53.33% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 1.6e-15, 41.54% id in 142 aa.
  
  
 0.910
VgrG
Rhs-family protein; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 3.4e-130, 53.79% id in 606 aa, and to Yersinia pestis putative rhs accessory genetic element ypo3606 or y0268 SWALL:AAM83862 (EMBL:AJ414158) (800 aa) fasta scores: E(): 2.2e-123, 51.03% id in 629 aa.
 
  
 0.818
ECA4279
Hypothetical protein; No significant database matches.
       0.773
ECA3385
Hypothetical protein; No significant database matches.
 
   
 0.766
ECA1220
Similar to Yersinia pestis putative thioredoxin ypo3082 or y1097 SWALL:Q8ZCB1 (EMBL:AJ414155) (289 aa) fasta scores: E(): 1e-69, 71.93% id in 285 aa, and to Escherichia coli hypothetical protein ybbn or b0492 SWALL:YBBN_ECOLI (SWALL:P77395) (284 aa) fasta scores: E(): 3.8e-68, 70.96% id in 279 aa.
    
   0.688
ECA1267
Thioredoxin; The N-terminal region of this CDS is similar to several thioredoxinx including Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1.7e-14, 46.22% id in 106 aa, and to Thiobacillus ferrooxidans thioredoxin trxA SWALL:THIO_THIFE (SWALL:P52233) (108 aa) fasta scores: E(): 2.3e-14, 45.79% id in 107 aa.
    
   0.688
ECA1555
Similar to Pseudomonas aeruginosa hypothetical protein Pa2336 SWALL:Q9I1E2 (EMBL:AE004659) (446 aa) fasta scores: E(): 5.1e-44, 39.82% id in 467 aa, and to Salmonella typhimurium putative pqq enzyme repeat stm3632 SWALL:Q8ZLA7 (EMBL:AE008868) (374 aa) fasta scores: E(): 9e-07, 30.04% id in 406 aa.
    
   0.688
trxC
Thioredoxin 2; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri thioredoxin 2 TrxC or b2582 or c3107 or z3867 or ecs3448 or sf2644 SWALL:THI2_ECOLI (SWALL:P33636) (139 aa) fasta scores: E(): 1.5e-43, 74.81% id in 139 aa; Belongs to the thioredoxin family.
    
   0.688
ECA4212
Thioredoxin; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1e-36, 88.78% id in 107 aa; Belongs to the thioredoxin family.
    
   0.688
ECA3442
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa.
 
  
 0.632
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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