STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4278Rhs-family protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa. (1427 aa)    
Predicted Functional Partners:
ECA4277
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf5 orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 5.6e-26, 53.33% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 1.6e-15, 41.54% id in 142 aa.
  
 
 0.986
ECA2868
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 7.5e-27, 54.81% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 9.4e-16, 39% id in 141 aa.
  
 
 0.941
VgrG
Rhs-family protein; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 3.4e-130, 53.79% id in 606 aa, and to Yersinia pestis putative rhs accessory genetic element ypo3606 or y0268 SWALL:AAM83862 (EMBL:AJ414158) (800 aa) fasta scores: E(): 2.2e-123, 51.03% id in 629 aa.
 
  
 0.821
ECA4279
Hypothetical protein; No significant database matches.
       0.773
ECA3385
Hypothetical protein; No significant database matches.
 
   
 0.765
ECA3445
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpB SWALL:Q93ED2 (EMBL:AF361470) (181 aa) fasta scores: E(): 2.6e-09, 32.66% id in 150 aa, and to Yersinia pestis conserved hypothetical protein y0037 SWALL:AAM83632 (EMBL:AE013605) (166 aa) fasta scores: E(): 5.6e-39, 68.71% id in 163 aa.
 
  
 0.645
ECA3442
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa.
 
  
 0.638
ECA3438
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 7.8e-61, 40.04% id in 447 aa, and to Vibrio cholerae hypothetical protein Vca0114 SWALL:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.7e-104, 60.04% id in 443 aa.
 
  
 0.597
ECA3444
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpC SWALL:Q93ED1 (EMBL:AF361470) (493 aa) fasta scores: E(): 6.4e-63, 37.36% id in 479 aa, and to Yersinia pestis hypothetical protein ypo3706 ypo3706 or y0038 SWALL:Q8ZAT4 (EMBL:AJ414158) (493 aa) fasta scores: E(): 3.1e-158, 78.09% id in 493 aa.
 
  
 0.589
ECA3437
Putative membrane protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis putative membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa.
 
  
 0.588
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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