STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4279Hypothetical protein; No significant database matches. (103 aa)    
Predicted Functional Partners:
ECA4277
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf5 orf5 SWALL:AAN64197 (EMBL:AY144117) (139 aa) fasta scores: E(): 5.6e-26, 53.33% id in 135 aa, and to Escherichia coli O157:H7 hypothetical protein z0706 z0706 or ecs0606 SWALL:Q8XBY6 (EMBL:AE005236) (153 aa) fasta scores: E(): 1.6e-15, 41.54% id in 142 aa.
       0.773
ECA4278
Rhs-family protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.6e-127, 42.61% id in 1361 aa, and to Escherichia coli O157:H7 rhs core protein with extension ecs0605 SWALL:Q8X2J4 (EMBL:AP002552) (1616 aa) fasta scores: E(): 3.9e-80, 37.61% id in 1361 aa.
       0.773
VgrG
Rhs-family protein; Similar to Photorhabdus luminescens VgrG SWALL:AAN64196 (EMBL:AY144117) (631 aa) fasta scores: E(): 3.4e-130, 53.79% id in 606 aa, and to Yersinia pestis putative rhs accessory genetic element ypo3606 or y0268 SWALL:AAM83862 (EMBL:AJ414158) (800 aa) fasta scores: E(): 2.2e-123, 51.03% id in 629 aa.
       0.678
ECA4275
Conserved hypothetical protein; Similar to Vibrio cholerae hcp=28 kDa secreted hydrophilic protein (HcpA or vca0017) and (hcp or vc1415) SWALL:P72350 (EMBL:S81006) (172 aa) fasta scores: E(): 4.3e-56, 78.48% id in 172 aa, and to Yersinia pestis hypothetical protein ypo3708 ypo3708 or y0036 SWALL:AAM83631 (EMBL:AJ414158) (172 aa) fasta scores: E(): 9.6e-60, 81.39% id in 172 aa. The Yersinia pestis orthologue of this gene is described as a hemolysin co-regulated protein. Also similar to ECA3428 (99.419% identity in 172aa overlap) and ECA2866 (94.767% identity in 172aa overlap).
       0.446
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.