STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
astBSulfate ester ABC transporter permease protein; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 2e-89, 51.46% id in 513 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC ssuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 2.1e-26, 36.82% id in 239 aa. (543 aa)    
Predicted Functional Partners:
atsC
Sulfate ester ABC transporter ATP-binding protein; Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 3.8e-47, 57.02% id in 242 aa, and to Bacillus subtilis putative aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.1e-35, 45.88% id in 231 aa.
 
 0.989
atsR-2
Similar to Pseudomonas aeruginosa putative sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa.
 
 0.959
atsR
Putative sulfate ester transporter, periplasmic binding component; Similar to Pseudomonas putida AtsR SWALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 2.2e-49, 45.8% id in 334 aa, and to Bacillus subtilis putative aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 9.5e-14, 26.68% id in 341 aa.
 
 0.958
astC
Putative sulfate ester transporter, ATP-binding component; Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 2.6e-52, 63.59% id in 239 aa, and to Bacillus subtilis putative aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.4e-34, 43.72% id in 247 aa, and to.
 
 0.956
ssuB
Putative aliphatic sulfonates transport ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
 
 0.951
ssuA
Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA or b0936 SWALL:SSUA_ECOLI (SWALL:P75853) (319 aa) fasta scores: E(): 9e-83, 72.78% id in 305 aa.
 
 0.950
ECA1525
ABC transporter ATP-binding protein; Similar to Pseudomonas aeruginosa probable ATP-binding component of ABC transporter pa2308 SWALL:Q9I1G7 (EMBL:AE004657) (282 aa) fasta scores: E(): 2.2e-67, 75.61% id in 246 aa, and to Xanthomonas campestris ABC transporter ATP-binding component nrtcd or xcc0773 SWALL:Q8PCG1 (EMBL:AE012177) (279 aa) fasta scores: E(): 1.8e-64, 70.91% id in 251 aa.
 
 0.948
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
 
 0.933
tauA
Similar to Escherichia coli taurine-binding periplasmic protein precursor TauA or SsiA or b0365 SWALL:TAUA_ECOLI (SWALL:Q47537) (320 aa) fasta scores: E(): 2.3e-23, 29.21% id in 332 aa, and to Rhizobium loti taurine transport system periplasmic protein mlr4517 SWALL:Q98DW7 (EMBL:AP003004) (337 aa) fasta scores: E(): 2e-27, 32.74% id in 342 aa.
 
 
 0.906
ECA1526
Similar to Pseudomonas putida ABC transporter, periplasmic binding protein pp0170 SWALL:AAN65803 (EMBL:AE016774) (339 aa) fasta scores: E(): 9.4e-68, 56.11% id in 335 aa, and to Xanthomonas axonopodis ABC transporter substrate binding protein xac0829 SWALL:Q8PP59 (EMBL:AE011714) (338 aa) fasta scores: E(): 1.1e-54, 47.72% id in 329 aa.
 
 0.850
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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