STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4304Hypothetical protein; No significant database matches. (230 aa)    
Predicted Functional Partners:
ECA4303
Putative exported protein; Similar to Streptomyces coelicolor hypothetical protein sco1536 or scl2.26C SWALL:Q9L273 (EMBL:AL939109) (822 aa) fasta scores: E(): 4e-150, 48.64% id in 847 aa, and to Bacillus subtilis YetA protein SWALL:O31530 (EMBL:Z99107) (857 aa) fasta scores: E(): 4.1e-50, 34.15% id in 887 aa.
     0.973
sftP
TonB-dependent receptor; Similar to Pseudomonas putida SftP SWALL:Q9R9W7 (EMBL:AF126201) (778 aa) fasta scores: E(): 5e-33, 37.71% id in 753 aa, and to Xanthomonas axonopodis TonB-dependent receptor FyuA or xac1143 SWALL:Q8PND0 (EMBL:AE011742) (804 aa) fasta scores: E(): 1.7e-22, 23.65% id in 782 aa.
 
     0.701
celV
Similar to Erwinia carotovora endoglucanase V precursor CelV SWALL:GUNV_ERWCA (SWALL:Q47096) (505 aa) fasta scores: E(): 9.2e-190, 94.65% id in 505 aa.
 
 0.586
pehN
Similar to Erwinia chrysanthemi putative polygalacturonase precursor PehN SWALL:Q8KKH7 (EMBL:AJ292044) (457 aa) fasta scores: E(): 9.4e-151, 80.13% id in 458 aa; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.527
paeY
Similar to Erwinia chrysanthemi pectin acetylesterase PaeY SWALL:O32563 (EMBL:Y09828) (551 aa) fasta scores: E(): 8.8e-135, 61.07% id in 542 aa.
 
 0.525
pehX
Similar to Erwinia chrysanthemi exo-poly-alpha-D-galacturonosidase precursor PehX SWALL:PEHX_ERWCH (SWALL:P15922) (602 aa) fasta scores: E(): 1e-59, 48.5% id in 635 aa, and to Klebsiella oxytoca polygalacturonase PehX SWALL:Q8VP71 (EMBL:AY065648) (658 aa) fasta scores: E(): 2.7e-155, 60.63% id in 658 aa; Belongs to the glycosyl hydrolase 28 family.
 
  
 0.491
atsR-2
Similar to Pseudomonas aeruginosa putative sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa.
       0.467
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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