Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA4324Similar to Yersinia pestis hypothetical protein ypo1619 or y1779 SWALL:AAM85347 (EMBL:AJ414149) (189 aa) fasta scores: E(): 8.4e-51, 70.21% id in 188 aa, and to Escherichia coli O6 hypothetical protein c0078 SWALL:AAN78574 (EMBL:AE016755) (78 aa) fasta scores: E(): 0.00011, 43.42% id in 76 aa. (231 aa)    
Predicted Functional Partners:
ECA4323
Putative exported protein; Similar to Yersinia pestis hypothetical protein ypo1620 or y1780 SWALL:Q8ZFR8 (EMBL:AJ414149) (137 aa) fasta scores: E(): 5.7e-33, 60.58% id in 137 aa.
       0.787
ECA4325
DeoR-family trancriptional regulator; Similar to Yersinia pestis orf40 ypo1938 or y2373 SWALL:Q9ZC48 (EMBL:AL031866) (256 aa) fasta scores: E(): 1.7e-68, 72.22% id in 252 aa, and to Escherichia coli hypothetical transcriptional regulator ygbi or b2735 SWALL:YGBI_ECOLI (SWALL:P52598) (265 aa) fasta scores: E(): 4.4e-58, 62.3% id in 252 aa.
       0.508
ECA4326
Putative membrane protein; No significant database matches.
       0.508
ugpB
Glycerol-3-phosphate-binding periplasmic protein; sn-glycerol-3-phosphate and glycerophosphoryl diester-binding protein interacts with the binding protein-dependent transport system UgpACE.
  
    0.433
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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