STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otnKConserved hypothetical protein; Catalyzes the ATP-dependent phosphorylation of 3-oxo- tetronate to 3-oxo-tetronate 4-phosphate. (424 aa)    
Predicted Functional Partners:
otnC
Putative sugar aldolase; Catalyzes the decarboxylation of 3-oxo-tetronate 4-phosphate to dihydroxyacetone phosphate (DHAP) and CO(2). Belongs to the aldolase class II family. AraD/FucA subfamily.
  
 0.987
ltnD
Putative oxidoreductase; Catalyzes oxidation of L-threonate to 2-oxo-tetronate. Can use either NAD(+) or NADP(+) as cosubstrate, with a preference for NAD(+).
 
  
 0.946
otnI
Putative isomerase; Catalyzes the isomerization of 2-oxo-tetronate to 3-oxo- tetronate.
 
  
 0.944
ECA4325
DeoR-family trancriptional regulator; Similar to Yersinia pestis orf40 ypo1938 or y2373 SWALL:Q9ZC48 (EMBL:AL031866) (256 aa) fasta scores: E(): 1.7e-68, 72.22% id in 252 aa, and to Escherichia coli hypothetical transcriptional regulator ygbi or b2735 SWALL:YGBI_ECOLI (SWALL:P52598) (265 aa) fasta scores: E(): 4.4e-58, 62.3% id in 252 aa.
 
   
 0.664
ECA4326
Putative membrane protein; No significant database matches.
       0.535
gntP-2
Gluconate permease; Similar to Corynebacterium glutamicum gluconate permease GntP or cgl2908 SWALL:Q9AL75 (EMBL:AJ296014) (463 aa) fasta scores: E(): 3.8e-52, 39.47% id in 461 aa, and to Escherichia coli putative transport protein b2740 SWALL:Q9F8R6 (EMBL:AF242209) (454 aa) fasta scores: E(): 7.1e-115, 73.78% id in 454 aa.
 
   
 0.533
pdxA2
PdxA-like protein; Catalyzes the NAD-dependent oxidation and subsequent decarboxylation of D-threonate 4-phosphate to produce dihydroxyacetone phosphate (DHAP). Can also use 4-hydroxy-L-threonine 4-phosphate as substrate.
 
     0.424
apnO
Conserved hypothetical protein; Involved in catabolism of D-apiose. Catalyzes the conversion of D-apionate to 3-oxo-isoapionate.
 
     0.423
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
 
   
 0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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