STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4336Similar to Pyrococcus abyssi aminotransferase pyrab01920 or pab2227 SWALL:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 1.7e-51, 40% id in 395 aa, and to Myxococcus xanthus putative aminotransferase protein SWALL:Q8KM38 (EMBL:AJ505751) (406 aa) fasta scores: E(): 5.6e-50, 39.94% id in 388 aa. (396 aa)    
Predicted Functional Partners:
livF
Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF or b3454 SWALL:LIVF_ECOLI (SWALL:P22731) (237 aa) fasta scores: E(): 2.7e-74, 89.27% id in 233 aa; Belongs to the ABC transporter superfamily.
       0.682
livG
Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri high-affinity branched-chain amino acid transport ATP-binding protein LivG or b3455 or z4825 or ecs4302 or sf3473 SWALL:LIVG_ECOLI (SWALL:P22730) (255 aa) fasta scores: E(): 2.8e-76, 83% id in 253 aa.
       0.682
livM
Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM or b3456 SWALL:LIVM_ECOLI (SWALL:P22729) (425 aa) fasta scores: E(): 2.8e-134, 80.7% id in 425 aa.
       0.682
livH
Similar to Escherichia coli, and Escherichia coli O157:H7 high-affinity branched-chain amino acid transport system permease protein LivH or b3457 or z4827 or ecs4304 SWALL:LIVH_ECOLI (SWALL:P08340) (308 aa) fasta scores: E(): 2.7e-95, 88.96% id in 308 aa.
       0.682
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
  
 0.646
ECA2456
Probable transcriptional regulator (partial); Partial CDS. Similar to the C-terminal regions of many including Pseudomonas aeruginosa probable transcriptional regulator pa2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 0.0017, 50% id in 42 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20956 SWALL:AAO07868 (EMBL:AE016811) (259 aa) fasta scores: E(): 0.0035, 48.78% id in 41 aa.
  
  
 0.424
livK
Similar to Escherichia coli leucine-specific binding protein precursor LivK or b3458 SWALL:LIVK_ECOLI (SWALL:P04816) (369 aa) fasta scores: E(): 9e-104, 75.27% id in 364 aa.
       0.424
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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