STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livGSimilar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri high-affinity branched-chain amino acid transport ATP-binding protein LivG or b3455 or z4825 or ecs4302 or sf3473 SWALL:LIVG_ECOLI (SWALL:P22730) (255 aa) fasta scores: E(): 2.8e-76, 83% id in 253 aa. (256 aa)    
Predicted Functional Partners:
livM
Similar to Escherichia coli high-affinity branched-chain amino acid transport system permease protein LivM or b3456 SWALL:LIVM_ECOLI (SWALL:P22729) (425 aa) fasta scores: E(): 2.8e-134, 80.7% id in 425 aa.
 
 0.999
livH
Similar to Escherichia coli, and Escherichia coli O157:H7 high-affinity branched-chain amino acid transport system permease protein LivH or b3457 or z4827 or ecs4304 SWALL:LIVH_ECOLI (SWALL:P08340) (308 aa) fasta scores: E(): 2.7e-95, 88.96% id in 308 aa.
 
 
 0.999
livK
Similar to Escherichia coli leucine-specific binding protein precursor LivK or b3458 SWALL:LIVK_ECOLI (SWALL:P04816) (369 aa) fasta scores: E(): 9e-104, 75.27% id in 364 aa.
 
 
 0.995
livF
Similar to Escherichia coli high-affinity branched-chain amino acid transport ATP-binding protein LivF or b3454 SWALL:LIVF_ECOLI (SWALL:P22731) (237 aa) fasta scores: E(): 2.7e-74, 89.27% id in 233 aa; Belongs to the ABC transporter superfamily.
 
 
0.993
ECA2146
Similar to Yersinia pestis putative branched-chain amino acid transport system, permease component ypo1189 SWALL:Q8ZGT8 (EMBL:AJ414147) (358 aa) fasta scores: E(): 1.8e-115, 85.95% id in 356 aa, and to Pseudomonas aeruginosa probable permease of ABC transporter pa4860 SWALL:Q9HUV3 (EMBL:AE004899) (359 aa) fasta scores: E(): 6.2e-107, 78.49% id in 358 aa.
  
 0.799
ECA2145
Similar to Yersinia pestis putative branched-chain amino acid transport system, permease component ypo1188 SWALL:Q8ZGT9 (EMBL:AJ414147) (533 aa) fasta scores: E(): 1.5e-133, 73.2% id in 515 aa, and to Pseudomonas putida branched-chain amino acid ABC transporter, permease protein, putative pp4842 SWALL:AAN70411 (EMBL:AE016792) (346 aa) fasta scores: E(): 4.7e-95, 77.16% id in 346 aa.
 
  
 0.795
ECA2148
Similar to Yersinia pestis putative ABC transport ATP-binding subunit ypo1191 SWALL:Q8ZGT6 (EMBL:AJ414147) (232 aa) fasta scores: E(): 7.4e-67, 78.44% id in 232 aa, and to Pseudomonas putida branched-chain amino acid ABC transporter, ATP-binding protein, putative pp4845 SWALL:AAN70414 (EMBL:AE016792) (232 aa) fasta scores: E(): 6.4e-68, 81.03% id in 232 aa.
 
  
0.713
ECA4336
Similar to Pyrococcus abyssi aminotransferase pyrab01920 or pab2227 SWALL:Q9V282 (EMBL:AJ248283) (410 aa) fasta scores: E(): 1.7e-51, 40% id in 395 aa, and to Myxococcus xanthus putative aminotransferase protein SWALL:Q8KM38 (EMBL:AJ505751) (406 aa) fasta scores: E(): 5.6e-50, 39.94% id in 388 aa.
       0.682
ECA2144
Putative substrate-binding periplasmic transport protein; Similar to Methylophilus methylotrophus amide-urea binding protein precursor FmdD SWALL:O50371 (EMBL:Y14964) (412 aa) fasta scores: E(): 2e-40, 42.13% id in 375 aa, and to Yersinia pestis putative substrate-binding periplasmic transport protein ypo1187 SWALL:Q8ZGU0 (EMBL:AJ414147) (422 aa) fasta scores: E(): 4.4e-144, 85.3% id in 422 aa.
  
  
 0.638
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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