Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA4358Putative membrane protein; Similar to Escherichia coli hypothetical protein yhhs or b3473 SWALL:YHHS_ECOLI (SWALL:P37621) (419 aa) fasta scores: E(): 3.3e-102, 70.88% id in 395 aa, and to Pseudomonas putida membrane protein, putative pp4492 SWALL:AAN70067 (EMBL:AE016790) (400 aa) fasta scores: E(): 1.4e-70, 52.68% id in 391 aa. (402 aa)    
Predicted Functional Partners:
ECA4359
Similar to Yersinia pestis putative membrane protein ypo3985 or y3844 SWALL:Q8ZA35 (EMBL:AJ414160) (360 aa) fasta scores: E(): 1.1e-91, 72.37% id in 333 aa, and to Erwinia chrysanthemi hypothetical 36.0 kDa protein in kdgk 5'region SWALL:YHJD_ERWCH (SWALL:P45417) (328 aa) fasta scores: E(): 2.8e-88, 70.65% id in 334 aa.
       0.538
ECA3470
Putative methyltransferase; Similar to Shigella flexneri orf, conserved hypothetical protein yafe or sf0196 SWALL:AAN41858 (EMBL:AE015056) (256 aa) fasta scores: E(): 8.2e-58, 64.28% id in 252 aa, and to Salmonella typhi putative methyltransferase yafe or sty0280 SWALL:Q8Z984 (EMBL:AL627266) (256 aa) fasta scores: E(): 4.1e-54, 60.31% id in 252 aa.
  
  
  0.524
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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