STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4364Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yhju or stm3624 or sty4176 or bcsG SWALL:Q8XFY5 (EMBL:AE008867) (559 aa) fasta scores: E(): 5.6e-96, 62.61% id in 559 aa, and to Escherichia coli O6 hypothetical protein yhju or c4350 SWALL:AAN82786 (EMBL:AE016768) (559 aa) fasta scores: E(): 1.3e-92, 61.41% id in 552 aa. (548 aa)    
Predicted Functional Partners:
ECA4366
Similar to Salmonella typhi hypothetical protein Sty4178 SWALL:Q8Z293 (EMBL:AL627281) (523 aa) fasta scores: E(): 3.7e-67, 44.09% id in 381 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 1.6e-66, 44.97% id in 378 aa.
 
 
 0.979
bcsB
Cellulose synthase catalytic subunit [UDP-forming] (pseudogene); Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
 
 
 
 0.962
ECA4369
Similar to Salmonella typhi hypothetical protein yhjq or sty4180 SWALL:Q8Z292 (EMBL:AL627281) (250 aa) fasta scores: E(): 7.1e-50, 51.22% id in 246 aa, and to Escherichia coli O6 hypothetical protein yhjq or c4346 SWALL:AAN82782 (EMBL:AE016768) (250 aa) fasta scores: E(): 4.3e-49, 51.04% id in 239 aa.
 
   
 0.913
ECA2294
Putative glycosyl transferase; Similar to Pseudomonas putida beta-(1-3)-glucosyl transferase, putative pp1526 SWALL:AAN67147 (EMBL:AE016779) (863 aa) fasta scores: E(): 2.2e-39, 32.08% id in 455 aa, and to Synechococcus elongatus cellulose synthase tll0007 SWALL:BAC07560 (EMBL:AP005369) (736 aa) fasta scores: E(): 2.9e-18, 26.26% id in 552 aa.
  
 
 0.907
bcsZ
Endoglucanase; Similar to Escherichia coli endoglucanase precursor BcsZ or BcsC or b3531 SWALL:GUN_ECOLI (SWALL:P37651) (368 aa) fasta scores: E(): 1.1e-87, 60.49% id in 367 aa, and to Erwinia chrysanthemi endo-1,4-beta-D-glucanase precursor Cel8Y SWALL:Q9APJ5 (EMBL:AF282321) (332 aa) fasta scores: E(): 7e-18, 29.11% id in 340 aa.
 
   
 0.880
ECA4367
Hypothetical protein; Similar to the N-terminal regions of Salmonella typhimurium putative cytoplasmic protein yhjs or stm3622 or bcsE SWALL:Q8ZLB5 (EMBL:AE008867) (523 aa) fasta scores: E(): 2.4e-06, 53.84% id in 52 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 9.7e-05, 47.05% id in 51 aa.
  
 
 0.873
bcsC
Similar to Escherichia coli cellulose synthase operon protein C BcsC or b3530 SWALL:BCSC_ECOLI (SWALL:P37650) (1140 aa) fasta scores: E(): 9.5e-207, 50.65% id in 1145 aa.
 
  
 0.824
ECA4365
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yhjt or stm3623 or sty4177 or bcsF SWALL:Q8XGR3 (EMBL:AE008867) (63 aa) fasta scores: E(): 0.0021, 40% id in 60 aa, and to Shigella flexneri orf, conserved hypothetical protein yhjt or sf3569 SWALL:AAN45020 (EMBL:AE015365) (63 aa) fasta scores: E(): 0.0065, 34.42% id in 61 aa.
       0.773
flgM
Similar to Escherichia coli, and Shigella flexneri negative regulator of flagellin synthesis FlgM or b1071 or sf1077 SWALL:FLGM_ECOLI (SWALL:P43532) (97 aa) fasta scores: E(): 4.5e-14, 59.18% id in 98 aa.
  
     0.711
flgN
Flagella synthesis protein; Similar to Salmonella typhimurium, and Salmonella typhi flagella synthesis protein FlgN or stm1171 or sty1210 SWALL:FLGN_SALTY (SWALL:P37406) (140 aa) fasta scores: E(): 2.4e-14, 38.88% id in 144 aa, and to Yersinia enterocolitica flagella synthesis protein FlgN SWALL:FLGN_YEREN (SWALL:Q56854) (147 aa) fasta scores: E(): 6.2e-22, 46.85% id in 143 aa.
  
     0.687
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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