STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4367Hypothetical protein; Similar to the N-terminal regions of Salmonella typhimurium putative cytoplasmic protein yhjs or stm3622 or bcsE SWALL:Q8ZLB5 (EMBL:AE008867) (523 aa) fasta scores: E(): 2.4e-06, 53.84% id in 52 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 9.7e-05, 47.05% id in 51 aa. (74 aa)    
Predicted Functional Partners:
ECA4369
Similar to Salmonella typhi hypothetical protein yhjq or sty4180 SWALL:Q8Z292 (EMBL:AL627281) (250 aa) fasta scores: E(): 7.1e-50, 51.22% id in 246 aa, and to Escherichia coli O6 hypothetical protein yhjq or c4346 SWALL:AAN82782 (EMBL:AE016768) (250 aa) fasta scores: E(): 4.3e-49, 51.04% id in 239 aa.
  
 
 0.756
ECA4364
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yhju or stm3624 or sty4176 or bcsG SWALL:Q8XFY5 (EMBL:AE008867) (559 aa) fasta scores: E(): 5.6e-96, 62.61% id in 559 aa, and to Escherichia coli O6 hypothetical protein yhju or c4350 SWALL:AAN82786 (EMBL:AE016768) (559 aa) fasta scores: E(): 1.3e-92, 61.41% id in 552 aa.
  
  
 0.747
ECA4365
Putative membrane protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yhjt or stm3623 or sty4177 or bcsF SWALL:Q8XGR3 (EMBL:AE008867) (63 aa) fasta scores: E(): 0.0021, 40% id in 60 aa, and to Shigella flexneri orf, conserved hypothetical protein yhjt or sf3569 SWALL:AAN45020 (EMBL:AE015365) (63 aa) fasta scores: E(): 0.0065, 34.42% id in 61 aa.
       0.658
ECA4366
Similar to Salmonella typhi hypothetical protein Sty4178 SWALL:Q8Z293 (EMBL:AL627281) (523 aa) fasta scores: E(): 3.7e-67, 44.09% id in 381 aa, and to Escherichia coli hypothetical protein yhjs or b3536 SWALL:YHJS_ECOLI (SWALL:P37657) (523 aa) fasta scores: E(): 1.6e-66, 44.97% id in 378 aa.
       0.658
ECA4368
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi yhjr protein yhjr or stm3621 or sty4179 SWALL:Q93IN4 (EMBL:AJ315770) (67 aa) fasta scores: E(): 4.9e-06, 43.86% id in 57 aa, and to Escherichia coli hypothetical protein yhjr or b3535 SWALL:YHJR_ECOLI (SWALL:P37656) (62 aa) fasta scores: E(): 0.00042, 46.34% id in 41 aa.
   
 
 0.651
ECA0516
Similar to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 1.8e-79, 73.03% id in 293 aa.
  
 
 0.492
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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