STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4376Similar to Rhizobium loti hypothetical protein Mlr6716 SWALL:Q988J5 (EMBL:AP003009) (335 aa) fasta scores: E(): 1.8e-46, 40.72% id in 329 aa, and to Agrobacterium tumefaciens hypothetical protein atu5252 or agr_pat_360 SWALL:Q8UK71 (EMBL:AE008947) (355 aa) fasta scores: E(): 9.2e-44, 41.52% id in 301 aa. (335 aa)    
Predicted Functional Partners:
ECA4378
Similar to Rhizobium meliloti putative aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 1.2e-86, 51.61% id in 434 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 6.4e-78, 47.85% id in 443 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     0.856
ECA4375
Similar to Pseudomonas putida transcriptional regulator, AraC family pp4508 SWALL:AAN70082 (EMBL:AE016790) (353 aa) fasta scores: E(): 2e-22, 29.16% id in 336 aa, and to Pseudomonas alcaligenes virulence regulating homolog SWALL:Q9ZFW7 (EMBL:AF092918) (346 aa) fasta scores: E(): 1.1e-21, 28.24% id in 347 aa.
 
    0.826
ECA2060
Similar to Rhizobium meliloti putative aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 7.6e-92, 58.13% id in 418 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 3.4e-74, 51.09% id in 411 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     0.698
ECA4377
Similar to Xanthomonas campestris ethanolamin permease EutP or xcc2259 SWALL:Q8P8I2 (EMBL:AE012333) (454 aa) fasta scores: E(): 8.6e-135, 76.99% id in 439 aa, and to Burkholderia pseudomallei permease lpw119 SWALL:Q93TX8 (EMBL:AF312940) (469 aa) fasta scores: E(): 9.3e-122, 71.81% id in 440 aa.
 
     0.641
thrA
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I [includes: aspartokinase I; homoserine dehydrogenase I] thra or thra1 or thra2 or b0002 SWALL:AK1H_ECOLI (SWALL:P00561) (820 aa) fasta scores: E(): 0, 82.41% id in 819 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.610
metL
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL or MetM or b3940 SWALL:AK2H_ECOLI (SWALL:P00562) (809 aa) fasta scores: E(): 0, 83.12% id in 800 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.610
thrC
Threonine synthase; Similar to Escherichia coli threonine synthase ThrC or b0004 SWALL:THRC_ECOLI (SWALL:P00934) (428 aa) fasta scores: E(): 4.2e-135, 80.51% id in 426 aa.
    
 0.568
ECA2235A
Putative short-chain dehydrogenase (partial); Similar to the C-terminal regions of several including Agrobacterium tumefaciens short-chain dehydrogenase atu5444 or agr_pat_651 SWALL:Q8UJN2 (EMBL:AE008965) (287 aa) fasta scores: E(): 7.5e-08, 50% id in 60 aa, and to Pseudomonas sp. putative short chain dehydrogenase orf65 SWALL:Q936Z5 (EMBL:U66917) (147 aa) fasta scores: E(): 3.2e-07, 50% id in 60 aa.
  
     0.410
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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