STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4378Similar to Rhizobium meliloti putative aminotransferase ra0973 or sma1761 SWALL:Q92YB1 (EMBL:AE007283) (438 aa) fasta scores: E(): 1.2e-86, 51.61% id in 434 aa, and to Agrobacterium tumefaciens pyridoxal phosphate aminotransferase atu5251 or agr_pat_358 SWALL:Q8UK72 (EMBL:AE008947) (464 aa) fasta scores: E(): 6.4e-78, 47.85% id in 443 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (447 aa)    
Predicted Functional Partners:
ECA2059
Putative phosphotransferase; Similar to Methylobacillus flagellatum homoserine kinase ThrB SWALL:KHSE_METFL (SWALL:Q9RAM6) (319 aa) fasta scores: E(): 6.1e-06, 28.8% id in 302 aa, and to Rhizobium loti homoserine kinase mlr7168 SWALL:Q986X7 (EMBL:AP003011) (364 aa) fasta scores: E(): 7e-40, 39.21% id in 329 aa.
  
  0.974
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
 0.953
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
 0.885
ECA4376
Similar to Rhizobium loti hypothetical protein Mlr6716 SWALL:Q988J5 (EMBL:AP003009) (335 aa) fasta scores: E(): 1.8e-46, 40.72% id in 329 aa, and to Agrobacterium tumefaciens hypothetical protein atu5252 or agr_pat_360 SWALL:Q8UK71 (EMBL:AE008947) (355 aa) fasta scores: E(): 9.2e-44, 41.52% id in 301 aa.
  
  0.871
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.775
ECA4377
Similar to Xanthomonas campestris ethanolamin permease EutP or xcc2259 SWALL:Q8P8I2 (EMBL:AE012333) (454 aa) fasta scores: E(): 8.6e-135, 76.99% id in 439 aa, and to Burkholderia pseudomallei permease lpw119 SWALL:Q93TX8 (EMBL:AF312940) (469 aa) fasta scores: E(): 9.3e-122, 71.81% id in 440 aa.
 
  
 0.745
thrA
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I [includes: aspartokinase I; homoserine dehydrogenase I] thra or thra1 or thra2 or b0002 SWALL:AK1H_ECOLI (SWALL:P00561) (820 aa) fasta scores: E(): 0, 82.41% id in 819 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
    
 0.726
metL
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL or MetM or b3940 SWALL:AK2H_ECOLI (SWALL:P00562) (809 aa) fasta scores: E(): 0, 83.12% id in 800 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
    
 0.726
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.716
lysC
Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or b4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 9.4e-136, 80.89% id in 445 aa; Belongs to the aspartokinase family.
    
 0.630
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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